Dead-reckoning animal movements in R: a reappraisal using Gundog.Tracks

BackgroundFine-scale data on animal position are increasingly enabling us to understand the details of animal movement ecology and dead-reckoning, a technique integrating motion sensor-derived information on heading and speed, can be used to reconstruct fine-scale movement paths at sub-second resolution, irrespective of the environment. On its own however, the dead-reckoning process is prone to cumulative errors, so that position estimates quickly become uncoupled from true location. Periodic ground-truthing with aligned location data (e.g., from global positioning technology) can correct for this drift between Verified Positions (VPs). We present step-by-step instructions for implementing Verified Position Correction (VPC) dead-reckoning in R using the tilt-compensated compass method, accompanied by the mathematical protocols underlying the code and improvements and extensions of this technique to reduce the trade-off between VPC rate and dead-reckoning accuracy. These protocols are all built into a user-friendly, fully annotated VPC dead-reckoning R function; Gundog.Tracks, with multi-functionality to reconstruct animal movement paths across terrestrial, aquatic, and aerial systems, provided within the Additional file 4 as well as online (GitHub).ResultsThe Gundog.Tracks function is demonstrated on three contrasting model species (the African lion Panthera leo, the Magellanic penguin Spheniscus magellanicus, and the Imperial cormorant Leucocarbo atriceps) moving on land, in water and in air. We show the effect of uncorrected errors in speed estimations, heading inaccuracies and infrequent VPC rate and demonstrate how these issues can be addressed.ConclusionsThe function provided will allow anyone familiar with R to dead-reckon animal tracks readily and accurately, as the key complex issues are dealt with by Gundog.Tracks. This will help the community to consider and implement a valuable, but often overlooked method of reconstructing high-resolution animal movement paths across diverse species and systems without requiring a bespoke application

Circles within spirals, wheels within wheels; Body rotation facilitates critical insights into animal behavioural ecology

How animals behave is fundamental to enhancing their lifetime fitness, so defining how animals move in space and time relates to many ecological questions, including resource selection, activity budgets and animal movement networks. Historically, animal behaviour and movement has been defined by direct observation, however recent advancements in biotelemetry have revolutionised how we now assess behaviour, particularly allowing animals to be monitored when they cannot be seen. Studies now pair ‘convectional’ radio telemetries with motion sensors to facilitate more detailed investigations of animal space-use. Motion sensitive tags (containing e.g., accelerometers and magnetometers) provide precise data on body movements which characterise behaviour, and this has been exemplified in extensive studies using accelerometery data, which has been linked to space-use defined by GPS. Conversely, consideration of body rotation (particularly change in yaw) is virtually absent within the biologging literature, even though various scales of yaw rotation can reveal important patterns in behaviour and movement, with animal heading being a fundamental component characterising space-use. This thesis explores animal body angles, particularly about the yaw axis, for elucidating animal movement ecology. I used five model species (a reptile, a mammal and three birds) to demonstrate the value of assessing body rotation for investigating fine-scale movement-specific behaviours. As part of this, I advanced the ‘dead-reckoning’ method, where fine-scale animal movement between temporally poorly resolved GPS fixes can be deduced using heading vectors and speed. I addressed many issues with this protocol, highlighting errors and potential solutions but was able to show how this approach leads to insights into many difficult-to-study animal behaviours. These ranged from elucidating how and where lions cross supposedly impermeable man-made barriers to examining how penguins react to tidal currents and then navigate their way to their nests far from the sea in colonies enclosed within thick vegetation

A Fast Calibration Method for Triaxial-Magnetometers

This paper presents a novel iterative calibration algorithm for tri-axial magnetometers. The proposed algorithm estimates and compensates the effects of deterministic interference parameters using only nine distinct measurements. The simulation results confirm that the proposed method outperforms the conventional ellipsoid fitting based models in terms of both accuracy and reliability even with the presence of a moderate wideband noise. The algorithm also achieves fast convergence , which makes it suitable for real-time application

A Fast Calibration Method for Triaxial-Magnetometers

This paper presents a novel iterative calibration algorithm for tri-axial magnetometers. The proposed algorithm estimates and compensates the effects of deterministic interference parameters using only nine distinct measurements. The simulation results confirm that the proposed method outperforms the conventional ellipsoid fitting based models in terms of both accuracy and reliability even with the presence of a moderate wideband noise. The algorithm also achieves fast convergence , which makes it suitable for real-time application