JGraphT -- A Java library for graph data structures and algorithms

Mathematical software and graph-theoretical algorithmic packages to efficiently model, analyze and query graphs are crucial in an era where large-scale spatial, societal and economic network data are abundantly available. One such package is JGraphT, a programming library which contains very efficient and generic graph data-structures along with a large collection of state-of-the-art algorithms. The library is written in Java with stability, interoperability and performance in mind. A distinctive feature of this library is the ability to model vertices and edges as arbitrary objects, thereby permitting natural representations of many common networks including transportation, social and biological networks. Besides classic graph algorithms such as shortest-paths and spanning-tree algorithms, the library contains numerous advanced algorithms: graph and subgraph isomorphism; matching and flow problems; approximation algorithms for NP-hard problems such as independent set and TSP; and several more exotic algorithms such as Berge graph detection. Due to its versatility and generic design, JGraphT is currently used in large-scale commercial, non-commercial and academic research projects. In this work we describe in detail the design and underlying structure of the library, and discuss its most important features and algorithms. A computational study is conducted to evaluate the performance of JGraphT versus a number of similar libraries. Experiments on a large number of graphs over a variety of popular algorithms show that JGraphT is highly competitive with other established libraries such as NetworkX or the BGL.Comment: Major Revisio

Distributed Connectivity Decomposition

We present time-efficient distributed algorithms for decomposing graphs with large edge or vertex connectivity into multiple spanning or dominating trees, respectively. As their primary applications, these decompositions allow us to achieve information flow with size close to the connectivity by parallelizing it along the trees. More specifically, our distributed decomposition algorithms are as follows: (I) A decomposition of each undirected graph with vertex-connectivity $k$ into (fractionally) vertex-disjoint weighted dominating trees with total weight $\Omega(\frac{k}{\log n})$, in $\widetilde{O}(D+\sqrt{n})$ rounds. (II) A decomposition of each undirected graph with edge-connectivity $\lambda$ into (fractionally) edge-disjoint weighted spanning trees with total weight $\lceil\frac{\lambda-1}{2}\rceil(1-\varepsilon)$, in $\widetilde{O}(D+\sqrt{n\lambda})$ rounds. We also show round complexity lower bounds of $\tilde{\Omega}(D+\sqrt{\frac{n}{k}})$ and $\tilde{\Omega}(D+\sqrt{\frac{n}{\lambda}})$ for the above two decompositions, using techniques of [Das Sarma et al., STOC'11]. Moreover, our vertex-connectivity decomposition extends to centralized algorithms and improves the time complexity of [Censor-Hillel et al., SODA'14] from $O(n^3)$ to near-optimal $\tilde{O}(m)$. As corollaries, we also get distributed oblivious routing broadcast with $O(1)$-competitive edge-congestion and $O(\log n)$-competitive vertex-congestion. Furthermore, the vertex connectivity decomposition leads to near-time-optimal $O(\log n)$-approximation of vertex connectivity: centralized $\widetilde{O}(m)$ and distributed $\tilde{O}(D+\sqrt{n})$. The former moves toward the 1974 conjecture of Aho, Hopcroft, and Ullman postulating an $O(m)$ centralized exact algorithm while the latter is the first distributed vertex connectivity approximation

The cavity approach for Steiner trees packing problems

The Belief Propagation approximation, or cavity method, has been recently applied to several combinatorial optimization problems in its zero-temperature implementation, the max-sum algorithm. In particular, recent developments to solve the edge-disjoint paths problem and the prize-collecting Steiner tree problem on graphs have shown remarkable results for several classes of graphs and for benchmark instances. Here we propose a generalization of these techniques for two variants of the Steiner trees packing problem where multiple "interacting" trees have to be sought within a given graph. Depending on the interaction among trees we distinguish the vertex-disjoint Steiner trees problem, where trees cannot share nodes, from the edge-disjoint Steiner trees problem, where edges cannot be shared by trees but nodes can be members of multiple trees. Several practical problems of huge interest in network design can be mapped into these two variants, for instance, the physical design of Very Large Scale Integration (VLSI) chips. The formalism described here relies on two components edge-variables that allows us to formulate a massage-passing algorithm for the V-DStP and two algorithms for the E-DStP differing in the scaling of the computational time with respect to some relevant parameters. We will show that one of the two formalisms used for the edge-disjoint variant allow us to map the max-sum update equations into a weighted maximum matching problem over proper bipartite graphs. We developed a heuristic procedure based on the max-sum equations that shows excellent performance in synthetic networks (in particular outperforming standard multi-step greedy procedures by large margins) and on large benchmark instances of VLSI for which the optimal solution is known, on which the algorithm found the optimum in two cases and the gap to optimality was never larger than 4 %

Learning-Augmented Query Policies for Minimum Spanning Tree with Uncertainty

We study how to utilize (possibly erroneous) predictions in a model for computing under uncertainty in which an algorithm can query unknown data. Our aim is to minimize the number of queries needed to solve the minimum spanning tree problem, a fundamental combinatorial optimization problem that has been central also to the research area of explorable uncertainty. For all integral ? ? 2, we present algorithms that are ?-robust and (1+1/?)-consistent, meaning that they use at most ?OPT queries if the predictions are arbitrarily wrong and at most (1+1/?)OPT queries if the predictions are correct, where OPT is the optimal number of queries for the given instance. Moreover, we show that this trade-off is best possible. Furthermore, we argue that a suitably defined hop distance is a useful measure for the amount of prediction error and design algorithms with performance guarantees that degrade smoothly with the hop distance. We also show that the predictions are PAC-learnable in our model. Our results demonstrate that untrusted predictions can circumvent the known lower bound of 2, without any degradation of the worst-case ratio. To obtain our results, we provide new structural insights for the minimum spanning tree problem that might be useful in the context of query-based algorithms regardless of predictions. In particular, we generalize the concept of witness sets - the key to lower-bounding the optimum - by proposing novel global witness set structures and completely new ways of adaptively using those

Secretary and Online Matching Problems with Machine Learned Advice

The classical analysis of online algorithms, due to its worst-case nature, can be quite pessimistic when the input instance at hand is far from worst-case. Often this is not an issue with machine learning approaches, which shine in exploiting patterns in past inputs in order to predict the future. However, such predictions, although usually accurate, can be arbitrarily poor. Inspired by a recent line of work, we augment three well-known online settings with machine learned predictions about the future, and develop algorithms that take them into account. In particular, we study the following online selection problems: (i) the classical secretary problem, (ii) online bipartite matching and (iii) the graphic matroid secretary problem. Our algorithms still come with a worst-case performance guarantee in the case that predictions are subpar while obtaining an improved competitive ratio (over the best-known classical online algorithm for each problem) when the predictions are sufficiently accurate. For each algorithm, we establish a trade-off between the competitive ratios obtained in the two respective cases

Online Multistage Subset Maximization Problems

Numerous combinatorial optimization problems (knapsack, maximum-weight matching, etc.) can be expressed as subset maximization problems: One is given a ground set N={1,...,n}, a collection F subseteq 2^N of subsets thereof such that the empty set is in F, and an objective (profit) function p: F -> R_+. The task is to choose a set S in F that maximizes p(S). We consider the multistage version (Eisenstat et al., Gupta et al., both ICALP 2014) of such problems: The profit function p_t (and possibly the set of feasible solutions F_t) may change over time. Since in many applications changing the solution is costly, the task becomes to find a sequence of solutions that optimizes the trade-off between good per-time solutions and stable solutions taking into account an additional similarity bonus. As similarity measure for two consecutive solutions, we consider either the size of the intersection of the two solutions or the difference of n and the Hamming distance between the two characteristic vectors. We study multistage subset maximization problems in the online setting, that is, p_t (along with possibly F_t) only arrive one by one and, upon such an arrival, the online algorithm has to output the corresponding solution without knowledge of the future. We develop general techniques for online multistage subset maximization and thereby characterize those models (given by the type of data evolution and the type of similarity measure) that admit a constant-competitive online algorithm. When no constant competitive ratio is possible, we employ lookahead to circumvent this issue. When a constant competitive ratio is possible, we provide almost matching lower and upper bounds on the best achievable one

Protecting a Graph with Mobile Guards

Mobile guards on the vertices of a graph are used to defend it against attacks on either its vertices or its edges. Various models for this problem have been proposed. In this survey we describe a number of these models with particular attention to the case when the attack sequence is infinitely long and the guards must induce some particular configuration before each attack, such as a dominating set or a vertex cover. Results from the literature concerning the number of guards needed to successfully defend a graph in each of these problems are surveyed.Comment: 29 pages, two figures, surve