7,585 research outputs found
Mining Entity Synonyms with Efficient Neural Set Generation
Mining entity synonym sets (i.e., sets of terms referring to the same entity)
is an important task for many entity-leveraging applications. Previous work
either rank terms based on their similarity to a given query term, or treats
the problem as a two-phase task (i.e., detecting synonymy pairs, followed by
organizing these pairs into synonym sets). However, these approaches fail to
model the holistic semantics of a set and suffer from the error propagation
issue. Here we propose a new framework, named SynSetMine, that efficiently
generates entity synonym sets from a given vocabulary, using example sets from
external knowledge bases as distant supervision. SynSetMine consists of two
novel modules: (1) a set-instance classifier that jointly learns how to
represent a permutation invariant synonym set and whether to include a new
instance (i.e., a term) into the set, and (2) a set generation algorithm that
enumerates the vocabulary only once and applies the learned set-instance
classifier to detect all entity synonym sets in it. Experiments on three real
datasets from different domains demonstrate both effectiveness and efficiency
of SynSetMine for mining entity synonym sets.Comment: AAAI 2019 camera-ready versio
Using Neural Networks for Relation Extraction from Biomedical Literature
Using different sources of information to support automated extracting of
relations between biomedical concepts contributes to the development of our
understanding of biological systems. The primary comprehensive source of these
relations is biomedical literature. Several relation extraction approaches have
been proposed to identify relations between concepts in biomedical literature,
namely, using neural networks algorithms. The use of multichannel architectures
composed of multiple data representations, as in deep neural networks, is
leading to state-of-the-art results. The right combination of data
representations can eventually lead us to even higher evaluation scores in
relation extraction tasks. Thus, biomedical ontologies play a fundamental role
by providing semantic and ancestry information about an entity. The
incorporation of biomedical ontologies has already been proved to enhance
previous state-of-the-art results.Comment: Artificial Neural Networks book (Springer) - Chapter 1
Reports Of Conferences, Institutes, And Seminars
This quarter\u27s column offers coverage of multiple sessions from the 2016 Electronic Resources & Libraries (ER&L) Conference, held April 3–6, 2016, in Austin, Texas. Topics in serials acquisitions dominate the column, including reports on altmetrics, cost per use, demand-driven acquisitions, and scholarly communications and the use of subscriptions agents; ERMS, access, and knowledgebases are also featured
The Emerging Scholarly Brain
It is now a commonplace observation that human society is becoming a coherent
super-organism, and that the information infrastructure forms its emerging
brain. Perhaps, as the underlying technologies are likely to become billions of
times more powerful than those we have today, we could say that we are now
building the lizard brain for the future organism.Comment: to appear in Future Professional Communication in Astronomy-II
(FPCA-II) editors A. Heck and A. Accomazz
Literature Based Discovery (LBD): Towards Hypothesis Generation and Knowledge Discovery in Biomedical Text Mining
Biomedical knowledge is growing in an astounding pace with a majority of this
knowledge is represented as scientific publications. Text mining tools and
methods represents automatic approaches for extracting hidden patterns and
trends from this semi structured and unstructured data. In Biomedical Text
mining, Literature Based Discovery (LBD) is the process of automatically
discovering novel associations between medical terms otherwise mentioned in
disjoint literature sets. LBD approaches proven to be successfully reducing the
discovery time of potential associations that are hidden in the vast amount of
scientific literature. The process focuses on creating concept profiles for
medical terms such as a disease or symptom and connecting it with a drug and
treatment based on the statistical significance of the shared profiles. This
knowledge discovery approach introduced in 1989 still remains as a core task in
text mining. Currently the ABC principle based two approaches namely open
discovery and closed discovery are mostly explored in LBD process. This review
starts with general introduction about text mining followed by biomedical text
mining and introduces various literature resources such as MEDLINE, UMLS, MESH,
and SemMedDB. This is followed by brief introduction of the core ABC principle
and its associated two approaches open discovery and closed discovery in LBD
process. This review also discusses the deep learning applications in LBD by
reviewing the role of transformer models and neural networks based LBD models
and its future aspects. Finally, reviews the key biomedical discoveries
generated through LBD approaches in biomedicine and conclude with the current
limitations and future directions of LBD.Comment: 43 Pages, 5 Figures, 4 Table
- …