Building Problem Solving Environments with Application Web Service Toolkits

Application portals, or Problem Solving Environments (PSEs), provide user environments that simplify access and integrate various distributed computational services for scientists working on particular classes of problems. Specific application portals are typically built on common sets of core services, so reusability of these services is a key problem in PSE development. In this paper we address the reusability problem by presenting a set of core services built using the Web services model and application metadata services that can be used to build science application front ends out of these core services

Interactive 3D visualization for theoretical Virtual Observatories

Virtual Observatories (VOs) are online hubs of scientific knowledge. They encompass a collection of platforms dedicated to the storage and dissemination of astronomical data, from simple data archives to e-research platforms offering advanced tools for data exploration and analysis. Whilst the more mature platforms within VOs primarily serve the observational community, there are also services fulfilling a similar role for theoretical data. Scientific visualization can be an effective tool for analysis and exploration of datasets made accessible through web platforms for theoretical data, which often contain spatial dimensions and properties inherently suitable for visualization via e.g. mock imaging in 2d or volume rendering in 3d. We analyze the current state of 3d visualization for big theoretical astronomical datasets through scientific web portals and virtual observatory services. We discuss some of the challenges for interactive 3d visualization and how it can augment the workflow of users in a virtual observatory context. Finally we showcase a lightweight client-server visualization tool for particle-based datasets allowing quantitative visualization via data filtering, highlighting two example use cases within the Theoretical Astrophysical Observatory.Comment: 10 Pages, 13 Figures, Accepted for Publication in Monthly Notices of the Royal Astronomical Societ

AQUAGRID: an extensible platform for collaborative problem solving in groundwater protection

AQUAGRID is the subsurface hydrology computational service of the Sardinian GRIDA3 infrastructure, designed to deliver complex environmental applications via a user-friendly Web portal. The service aims to provide to water professionals integrated modeling tools to solve water resources management problems and aid decision making for contaminated soil and groundwater. In this paper, the AQUAGRID application concept and enabling technologies are illustrated. At the heart of the service are the computational models to simulate complex and large groundwater flow and contaminant transport problems and geochemical speciation. AQUAGRID is built on top of compute-Grid technologies by means of the EnginFrame Grid framework. Distributed data management is provided by the Storage Resource Broker data-Grid middleware. The resulting environment allows end-users to perform groundwater simulations and to visualize and interact with their results, using graphs, 3D images and annotated maps. The problem solving capability of the platform is demonstrated using the results of two case studies deployed

Advancement of Computing on Large Datasets via Parallel Computing and Cyberinfrastructure

Large datasets require efficient processing, storage and management to efficiently extract useful information for innovation and decision-making. This dissertation demonstrates novel approaches and algorithms using virtual memory approach, parallel computing and cyberinfrastructure. First, we introduce a tailored user-level virtual memory system for parallel algorithms that can process large raster data files in a desktop computer environment with limited memory. The application area for this portion of the study is to develop parallel terrain analysis algorithms that use multi-threading to take advantage of common multi-core processors for greater efficiency. Second, we present two novel parallel WaveCluster algorithms that perform cluster analysis by taking advantage of discrete wavelet transform to reduce large data to coarser representations so data is smaller and more easily managed than the original data in size and complexity. Finally, this dissertation demonstrates an HPC gateway service that abstracts away many details and complexities involved in the use of HPC systems including authentication, authorization, and data and job management

Workflows for Quantitative Data Analysis in The Social Sciences

The background is given to how statistical analysis is used by quantitative social scientists. Developing statistical analyses requires substantial effort, yet there are important limitations in current practice. This has motivated the authors to create a more systematic and effective methodology with supporting tools. The approach to modelling quantitative data analysis in the social sciences is presented. Analysis scripts are treated abstractly as mathematical functions and concretely as web services. This allows individual scripts to be combined into high-level workflows. A comprehensive set of tools allows workflows to be defined, automatically validated and verified, and automatically implemented. The workflows expose opportunities for parallel execution, can define support for proper fault handling, and can be realised by non-technical users. Services, workflows and datasets can also be readily shared. The approach is illustrated with a realistic case study that analyses occupational position in relation to health

3rd EGEE User Forum

We have organized this book in a sequence of chapters, each chapter associated with an application or technical theme introduced by an overview of the contents, and a summary of the main conclusions coming from the Forum for the chapter topic. The first chapter gathers all the plenary session keynote addresses, and following this there is a sequence of chapters covering the application flavoured sessions. These are followed by chapters with the flavour of Computer Science and Grid Technology. The final chapter covers the important number of practical demonstrations and posters exhibited at the Forum. Much of the work presented has a direct link to specific areas of Science, and so we have created a Science Index, presented below. In addition, at the end of this book, we provide a complete list of the institutes and countries involved in the User Forum