Subset feedback vertex set is fixed parameter tractable

The classical Feedback Vertex Set problem asks, for a given undirected graph G and an integer k, to find a set of at most k vertices that hits all the cycles in the graph G. Feedback Vertex Set has attracted a large amount of research in the parameterized setting, and subsequent kernelization and fixed-parameter algorithms have been a rich source of ideas in the field. In this paper we consider a more general and difficult version of the problem, named Subset Feedback Vertex Set (SUBSET-FVS in short) where an instance comes additionally with a set S ? V of vertices, and we ask for a set of at most k vertices that hits all simple cycles passing through S. Because of its applications in circuit testing and genetic linkage analysis SUBSET-FVS was studied from the approximation algorithms perspective by Even et al. [SICOMP'00, SIDMA'00]. The question whether the SUBSET-FVS problem is fixed-parameter tractable was posed independently by Kawarabayashi and Saurabh in 2009. We answer this question affirmatively. We begin by showing that this problem is fixed-parameter tractable when parametrized by |S|. Next we present an algorithm which reduces the given instance to 2^k n^O(1) instances with the size of S bounded by O(k^3), using kernelization techniques such as the 2-Expansion Lemma, Menger's theorem and Gallai's theorem. These two facts allow us to give a 2^O(k log k) n^O(1) time algorithm solving the Subset Feedback Vertex Set problem, proving that it is indeed fixed-parameter tractable.Comment: full version of a paper presented at ICALP'1

Maximum Minimal Feedback Vertex Set: A Parameterized Perspective

In this paper we study a maximization version of the classical Feedback Vertex Set (FVS) problem, namely, the Max Min FVS problem, in the realm of parameterized complexity. In this problem, given an undirected graph $G$, a positive integer $k$, the question is to check whether $G$ has a minimal feedback vertex set of size at least $k$. We obtain following results for Max Min FVS. 1) We first design a fixed parameter tractable (FPT) algorithm for Max Min FVS running in time $10^kn^{\mathcal{O}(1)}$. 2) Next, we consider the problem parameterized by the vertex cover number of the input graph (denoted by $\mathsf{vc}(G)$), and design an algorithm with running time $2^{\mathcal{O}(\mathsf{vc}(G)\log \mathsf{vc}(G))}n^{\mathcal{O}(1)}$. We complement this result by showing that the problem parameterized by $\mathsf{vc}(G)$ does not admit a polynomial compression unless coNP $\subseteq$ NP/poly. 3) Finally, we give an FPT-approximation scheme (fpt-AS) parameterized by $\mathsf{vc}(G)$. That is, we design an algorithm that for every $\epsilon >0$, runs in time $2^{\mathcal{O}\left(\frac{\mathsf{vc}(G)}{\epsilon}\right)} n^{\mathcal{O}(1)}$ and returns a minimal feedback vertex set of size at least $(1-\epsilon){\sf opt}$

Hitting forbidden minors: Approximation and Kernelization

We study a general class of problems called F-deletion problems. In an F-deletion problem, we are asked whether a subset of at most $k$ vertices can be deleted from a graph $G$ such that the resulting graph does not contain as a minor any graph from the family F of forbidden minors. We obtain a number of algorithmic results on the F-deletion problem when F contains a planar graph. We give (1) a linear vertex kernel on graphs excluding $t$-claw $K_{1,t}$, the star with $t$ leves, as an induced subgraph, where $t$ is a fixed integer. (2) an approximation algorithm achieving an approximation ratio of $O(\log^{3/2} OPT)$, where $OPT$ is the size of an optimal solution on general undirected graphs. Finally, we obtain polynomial kernels for the case when F contains graph $\theta_c$ as a minor for a fixed integer $c$. The graph $\theta_c$ consists of two vertices connected by $c$ parallel edges. Even though this may appear to be a very restricted class of problems it already encompasses well-studied problems such as {\sc Vertex Cover}, {\sc Feedback Vertex Set} and Diamond Hitting Set. The generic kernelization algorithm is based on a non-trivial application of protrusion techniques, previously used only for problems on topological graph classes

Faster Exponential-Time Approximation Algorithms Using Approximate Monotone Local Search

We generalize the monotone local search approach of Fomin, Gaspers, Lokshtanov and Saurabh [J.ACM 2019], by establishing a connection between parameterized approximation and exponential-time approximation algorithms for monotone subset minimization problems. In a monotone subset minimization problem the input implicitly describes a non-empty set family over a universe of size n which is closed under taking supersets. The task is to find a minimum cardinality set in this family. Broadly speaking, we use approximate monotone local search to show that a parameterized ?-approximation algorithm that runs in c^k?n^?(1) time, where k is the solution size, can be used to derive an ?-approximation randomized algorithm that runs in d??n^?(1) time, where d is the unique value in (1, 1+{c-1}/?) such that ?(1/??{d-1}/{c-1}) = {ln c}/? and ?(a?b) is the Kullback-Leibler divergence. This running time matches that of Fomin et al. for ? = 1, and is strictly better when ? > 1, for any c > 1. Furthermore, we also show that this result can be derandomized at the expense of a sub-exponential multiplicative factor in the running time. We use an approximate variant of the exhaustive search as a benchmark for our algorithm. We show that the classic 2??n^?(1) exhaustive search can be adapted to an ?-approximate exhaustive search that runs in time (1+exp(-???(1/(?))))??n^?(1), where ? is the entropy function. Furthermore, we provide a lower bound stating that the running time of this ?-approximate exhaustive search is the best achievable running time in an oracle model. When compared to approximate exhaustive search, and to other techniques, the running times obtained by approximate monotone local search are strictly better for any ? ? 1, c > 1. We demonstrate the potential of approximate monotone local search by deriving new and faster exponential approximation algorithms for Vertex Cover, 3-Hitting Set, Directed Feedback Vertex Set, Directed Subset Feedback Vertex Set, Directed Odd Cycle Transversal and Undirected Multicut. For instance, we get a 1.1-approximation algorithm for Vertex Cover with running time 1.114??n^?(1), improving upon the previously best known 1.1-approximation running in time 1.127??n^?(1) by Bourgeois et al. [DAM 2011]

Inapproximability of H-Transversal/Packing

Given an undirected graph G=(V,E) and a fixed pattern graph H with k vertices, we consider the H-Transversal and H-Packing problems. The former asks to find the smallest subset S of vertices such that the subgraph induced by V - S does not have H as a subgraph, and the latter asks to find the maximum number of pairwise disjoint k-subsets S1, ..., Sm such that the subgraph induced by each Si has H as a subgraph. We prove that if H is 2-connected, H-Transversal and H-Packing are almost as hard to approximate as general k-Hypergraph Vertex Cover and k-Set Packing, so it is NP-hard to approximate them within a factor of Omega(k) and Omega(k / polylog(k)) respectively. We also show that there is a 1-connected H where H-Transversal admits an O(log k)-approximation algorithm, so that the connectivity requirement cannot be relaxed from 2 to 1. For a special case of H-Transversal where H is a (family of) cycles, we mention the implication of our result to the related Feedback Vertex Set problem, and give a different hardness proof for directed graphs

Randomized Algorithms for the Loop Cutset Problem

We show how to find a minimum weight loop cutset in a Bayesian network with high probability. Finding such a loop cutset is the first step in the method of conditioning for inference. Our randomized algorithm for finding a loop cutset outputs a minimum loop cutset after O(c 6^k kn) steps with probability at least 1 - (1 - 1/(6^k))^c6^k, where c > 1 is a constant specified by the user, k is the minimal size of a minimum weight loop cutset, and n is the number of vertices. We also show empirically that a variant of this algorithm often finds a loop cutset that is closer to the minimum weight loop cutset than the ones found by the best deterministic algorithms known

Digraph Complexity Measures and Applications in Formal Language Theory

We investigate structural complexity measures on digraphs, in particular the cycle rank. This concept is intimately related to a classical topic in formal language theory, namely the star height of regular languages. We explore this connection, and obtain several new algorithmic insights regarding both cycle rank and star height. Among other results, we show that computing the cycle rank is NP-complete, even for sparse digraphs of maximum outdegree 2. Notwithstanding, we provide both a polynomial-time approximation algorithm and an exponential-time exact algorithm for this problem. The former algorithm yields an O((log n)^(3/2))- approximation in polynomial time, whereas the latter yields the optimum solution, and runs in time and space O*(1.9129^n) on digraphs of maximum outdegree at most two. Regarding the star height problem, we identify a subclass of the regular languages for which we can precisely determine the computational complexity of the star height problem. Namely, the star height problem for bideterministic languages is NP-complete, and this holds already for binary alphabets. Then we translate the algorithmic results concerning cycle rank to the bideterministic star height problem, thus giving a polynomial-time approximation as well as a reasonably fast exact exponential algorithm for bideterministic star height.Comment: 19 pages, 1 figur