21,042 research outputs found
2D adaptive grid-based image analysis approach for biological networks
The accurate analysis of biological networks, enabled by the precise capture of their individual components, can reveal important underlying biological principles. Efficient image processing techniques are required to precisely identify and quantify the networks from complex images. In this paper, we present a novel approach for a weighted and undirected graph-based network reconstruction and quantification from 2D images using an adaptive rectangular mesh refinement approach. The proposed approach is able to efficiently identify the organizational principles of the network, capturing the underlying network structure, and computing relevant network topological properties. We validate the proposed approach by comparing it with the state-of-the-art method
A multi-view approach to cDNA micro-array analysis
The official published version can be obtained from the link below.Microarray has emerged as a powerful technology that enables biologists to study thousands of genes simultaneously, therefore, to obtain a better understanding of the gene interaction and regulation mechanisms. This paper is concerned with improving the processes involved in the analysis of microarray image data. The main focus is to clarify an image's feature space in an unsupervised manner. In this paper, the Image Transformation Engine (ITE), combined with different filters, is investigated. The proposed methods are applied to a set of real-world cDNA images. The MatCNN toolbox is used during the segmentation process. Quantitative comparisons between different filters are carried out. It is shown that the CLD filter is the best one to be applied with the ITE.This work was supported in part by the Engineering and Physical Sciences Research
Council (EPSRC) of the UK under Grant GR/S27658/01, the National Science Foundation of China under Innovative Grant 70621001, Chinese Academy of Sciences
under Innovative Group Overseas Partnership Grant, the BHP Billiton Cooperation of Australia Grant, the International Science and Technology Cooperation Project of China
under Grant 2009DFA32050 and the Alexander von Humboldt Foundation of Germany
Deformable Convolutional Networks
Convolutional neural networks (CNNs) are inherently limited to model
geometric transformations due to the fixed geometric structures in its building
modules. In this work, we introduce two new modules to enhance the
transformation modeling capacity of CNNs, namely, deformable convolution and
deformable RoI pooling. Both are based on the idea of augmenting the spatial
sampling locations in the modules with additional offsets and learning the
offsets from target tasks, without additional supervision. The new modules can
readily replace their plain counterparts in existing CNNs and can be easily
trained end-to-end by standard back-propagation, giving rise to deformable
convolutional networks. Extensive experiments validate the effectiveness of our
approach on sophisticated vision tasks of object detection and semantic
segmentation. The code would be released
Event-based Vision: A Survey
Event cameras are bio-inspired sensors that differ from conventional frame
cameras: Instead of capturing images at a fixed rate, they asynchronously
measure per-pixel brightness changes, and output a stream of events that encode
the time, location and sign of the brightness changes. Event cameras offer
attractive properties compared to traditional cameras: high temporal resolution
(in the order of microseconds), very high dynamic range (140 dB vs. 60 dB), low
power consumption, and high pixel bandwidth (on the order of kHz) resulting in
reduced motion blur. Hence, event cameras have a large potential for robotics
and computer vision in challenging scenarios for traditional cameras, such as
low-latency, high speed, and high dynamic range. However, novel methods are
required to process the unconventional output of these sensors in order to
unlock their potential. This paper provides a comprehensive overview of the
emerging field of event-based vision, with a focus on the applications and the
algorithms developed to unlock the outstanding properties of event cameras. We
present event cameras from their working principle, the actual sensors that are
available and the tasks that they have been used for, from low-level vision
(feature detection and tracking, optic flow, etc.) to high-level vision
(reconstruction, segmentation, recognition). We also discuss the techniques
developed to process events, including learning-based techniques, as well as
specialized processors for these novel sensors, such as spiking neural
networks. Additionally, we highlight the challenges that remain to be tackled
and the opportunities that lie ahead in the search for a more efficient,
bio-inspired way for machines to perceive and interact with the world
Fast fluorescence microscopy for imaging the dynamics of embryonic development
Live imaging has gained a pivotal role in developmental biology since it increasingly allows real-time observation of cell behavior in intact organisms. Microscopes that can capture the dynamics of ever-faster biological events, fluorescent markers optimal for in vivo imaging, and, finally, adapted reconstruction and analysis programs to complete data flow all contribute to this success. Focusing on temporal resolution, we discuss how fast imaging can be achieved with minimal prejudice to spatial resolution, photon count, or to reliably and automatically analyze images. In particular, we show how integrated approaches to imaging that combine bright fluorescent probes, fast microscopes, and custom post-processing techniques can address the kinetics of biological systems at multiple scales. Finally, we discuss remaining challenges and opportunities for further advances in this field
MeshfreeFlowNet: A Physics-Constrained Deep Continuous Space-Time Super-Resolution Framework
We propose MeshfreeFlowNet, a novel deep learning-based super-resolution
framework to generate continuous (grid-free) spatio-temporal solutions from the
low-resolution inputs. While being computationally efficient, MeshfreeFlowNet
accurately recovers the fine-scale quantities of interest. MeshfreeFlowNet
allows for: (i) the output to be sampled at all spatio-temporal resolutions,
(ii) a set of Partial Differential Equation (PDE) constraints to be imposed,
and (iii) training on fixed-size inputs on arbitrarily sized spatio-temporal
domains owing to its fully convolutional encoder. We empirically study the
performance of MeshfreeFlowNet on the task of super-resolution of turbulent
flows in the Rayleigh-Benard convection problem. Across a diverse set of
evaluation metrics, we show that MeshfreeFlowNet significantly outperforms
existing baselines. Furthermore, we provide a large scale implementation of
MeshfreeFlowNet and show that it efficiently scales across large clusters,
achieving 96.80% scaling efficiency on up to 128 GPUs and a training time of
less than 4 minutes.Comment: Supplementary Video: https://youtu.be/mjqwPch9gDo. Accepted to SC2
- …