The spontaneous breaking of SU(4) heterotic standard models by Z_3 x Z_3
Wilson lines to the MSSM with three right-handed neutrino supermultiplets and
gauge group SU(3)_C x SU(2)_L x U(1) x U(1) is explored. The two-dimensional
subspace of the Spin(10) Lie algebra that commutes with su(3)_C + su(2)_L is
analyzed. It is shown that there is a unique basis for which the initial soft
supersymmetry breaking parameters are uncorrelated and for which the U(1) x
U(1) field strengths have no kinetic mixing at any scale. If the Wilson lines
"turn on" at different scales, there is an intermediate regime with either a
left-right or a Pati-Salam type model. We compute their spectra directly from
string theory, and adjust the associated mass parameter so that all gauge
parameters exactly unify. A detailed analysis of the running gauge couplings
and soft gaugino masses is presented.Comment: 59 pages, 9 figure