Segue: Overviewing Evolution Patterns of Egocentric Networks by Interactive Construction of Spatial Layouts

Getting the overall picture of how a large number of ego-networks evolve is a common yet challenging task. Existing techniques often require analysts to inspect the evolution patterns of ego-networks one after another. In this study, we explore an approach that allows analysts to interactively create spatial layouts in which each dot is a dynamic ego-network. These spatial layouts provide overviews of the evolution patterns of ego-networks, thereby revealing different global patterns such as trends, clusters and outliers in evolution patterns. To let analysts interactively construct interpretable spatial layouts, we propose a data transformation pipeline, with which analysts can adjust the spatial layouts and convert dynamic egonetworks into event sequences to aid interpretations of the spatial positions. Based on this transformation pipeline, we developed Segue, a visual analysis system that supports thorough exploration of the evolution patterns of ego-networks. Through two usage scenarios, we demonstrate how analysts can gain insights into the overall evolution patterns of a large collection of ego-networks by interactively creating different spatial layouts.Comment: Published at IEEE Conference on Visual Analytics Science and Technology (IEEE VAST 2018

Synthesizing Dynamic Patterns by Spatial-Temporal Generative ConvNet

Video sequences contain rich dynamic patterns, such as dynamic texture patterns that exhibit stationarity in the temporal domain, and action patterns that are non-stationary in either spatial or temporal domain. We show that a spatial-temporal generative ConvNet can be used to model and synthesize dynamic patterns. The model defines a probability distribution on the video sequence, and the log probability is defined by a spatial-temporal ConvNet that consists of multiple layers of spatial-temporal filters to capture spatial-temporal patterns of different scales. The model can be learned from the training video sequences by an "analysis by synthesis" learning algorithm that iterates the following two steps. Step 1 synthesizes video sequences from the currently learned model. Step 2 then updates the model parameters based on the difference between the synthesized video sequences and the observed training sequences. We show that the learning algorithm can synthesize realistic dynamic patterns

Spatial patterns of competing random walkers

We review recent results obtained from simple individual-based models of biological competition in which birth and death rates of an organism depend on the presence of other competing organisms close to it. In addition the individuals perform random walks of different types (Gaussian diffusion and L\'{e}vy flights). We focus on how competition and random motions affect each other, from which spatial instabilities and extinctions arise. Under suitable conditions, competitive interactions lead to clustering of individuals and periodic pattern formation. Random motion has a homogenizing effect and then delays this clustering instability. When individuals from species differing in their random walk characteristics are allowed to compete together, the ones with a tendency to form narrower clusters get a competitive advantage over the others. Mean-field deterministic equations are analyzed and compared with the outcome of the individual-based simulations.Comment: 38 pages, including 6 figure

Grid Cell Hexagonal Patterns Formed by Fast Self-Organized Learning within Entorhinal Cortex

Grid cells in the dorsal segment of the medial entorhinal cortex (dMEC) show remarkable hexagonal activity patterns, at multiple spatial scales, during spatial navigation. How these hexagonal patterns arise has excited intense interest. It has previously been shown how a selforganizing map can convert firing patterns across entorhinal grid cells into hippocampal place cells that are capable of representing much larger spatial scales. Can grid cell firing fields also arise during navigation through learning within a self-organizing map? A neural model is proposed that converts path integration signals into hexagonal grid cell patterns of multiple scales. This GRID model creates only grid cell patterns with the observed hexagonal structure, predicts how these hexagonal patterns can be learned from experience, and can process biologically plausible neural input and output signals during navigation. These results support a unified computational framework for explaining how entorhinal-hippocampal interactions support spatial navigation.CELEST, a National Science Foundation Science of Learning Center (SBE-0354378); SyNAPSE program of Defense Advanced Research Projects Agency (HR00ll-09-3-0001, HR0011-09-C-0011

Spatial patterns in intermunicipal Danish commuting

Intermunicipal variations in in-commuting are mainly explained by variations in number of workplaces, urbanization degree and wealth, whereas variations in out- commuting are mainly determined by variations in workforce size, number of workplaces, living patterns and unemployment. This is quite satisfactory according to existing theory. However, of these explanatory factors only the number of workplaces influences the net in-commuting. But by using spatial lag structures it is shown that unemployment in neighbourhood municipalities influences net in-commuting. Finally, evidence of impact of local spatial industrial patterns on the commuting behaviour is provided, and the nature and reasons for these spatial patterns are discussed.

Spatial Current Patterns, Dephasing and Current Imaging in Graphene Nanoribbons

Using the non-equilibrium Keldysh Green's function formalism, we investigate the local, non-equilibrium charge transport in graphene nanoribbons (GNRs). In particular, we demonstrate that the spatial current patterns associated with discrete transmission resonances sensitively depend on the GNRs' geometry, size, and aspect ratio, the location and number of leads, and the presence of dephasing. We identify a relation between the spatial form of the current patterns, and the number of degenerate energy states participating in the charge transport. Furthermore, we demonstrate a principle of superposition for the conductance and spatial current patterns in multiple-lead configurations. We demonstrate that scanning tunneling microscopy (STM) can be employed to image spatial current paths in GNR with atomic resolution, providing important insight into the form of local charge transport. Finally, we investigate the effects of dephasing on the spatial current patterns, and show that with decreasing dephasing time, the current patterns evolve smoothly from those of a ballistic quantum network to those of classical resistor network.Comment: 25 pages, 12 figure

Spatial Patterns of Pulmonary Tuberculosis Analysing Rainfall Patterns in Visual Formation

Management sustainability related tuberculosis patient treatment was limited. Tuberculosis analysis was still in the form of data aggregation. This is cross sectional survey using geographical information system, analyzed by descriptive methods, the sample included 162 pulmonary tuberrculosis patient in 2014. The variables were pulmonary tuberrculosis patients and isohyet data. Mycrobacterium tuberculosis will be survive and multiply during rainy season. Rainfall data was an increasing pattern from first quarter to fourth quarter in 2014, however data in 2011, 2012 and 2013, which each quarter was largely experiencing sustained increase and decline. Pulmonary tuberrculosis patients were most prevalent in 2014. It was increase in the rainy season. The most high rainfall intensity (> 2400 mm) in east of Lendah and western of Kokap areas, while the lowest intensity (< 1500 mm) in east of Nanggulan, in the south of Panjatan and Galur areas. It was mostly located in areas with high rainfall intensity (2200 - 2400 mm) which spreads and stretches in Sentolo, Wates, and Panjatan areas. Pulmonary tuberrculosis occurred over the rainy season. Spatial pattern distribution of pulmonary tuberrculosis patients in high rainfall intensity spreads and stretches from east to west areas. Active case monitoring program should be performed by tuberculosis program that concerned in areas of high rainfall intensity

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumorinfiltrating lymphocytes (TILs) based on H&E images from 13 TCGA tumor types. These TIL maps are derived through computational staining using a convolutional neural network trained to classify patches of images. Affinity propagation revealed local spatial structure in TIL patterns and correlation with overall survival. TIL map structural patterns were grouped using standard histopathological parameters. These patterns are enriched in particular T cell subpopulations derived from molecular measures. TIL densities and spatial structure were differentially enriched among tumor types, immune subtypes, and tumor molecular subtypes, implying that spatial infiltrate state could reflect particular tumor cell aberration states. Obtaining spatial lymphocytic patterns linked to the rich genomic characterization of TCGA samples demonstrates one use for the TCGA image archives with insights into the tumor-immune microenvironment