Improved vacuum probe collects surface-contamination samples

Redesigned vacuum-probe surface sampler, consisting of wand with disposable probe and filter assembly, collects specimens of fallout and handling contamination

Fibre imaging bundles for full-field optical coherence tomography

An imaging fibre bundle is incorporated into a full-field imaging OCT system, with the aim of eliminating the mechanical scanning currently required at the probe tip in endoscopic systems. Each fibre within the imaging bundle addresses a Fizeau interferometer formed between the bundle end and the sample, a configuration which ensures down lead insensitivity of the probe fibres, preventing variations in sensitivity due to polarization changes in the many thousand constituent fibres. The technique allows acquisition of information across a planar region with single-shot measurement, in the form of a 2D image detected using a digital CCD camera. Depth scanning components are now confined within a processing interferometer external to the completely passive endoscope probe. The technique has been evaluated in our laboratory for test samples, and images acquired using the bundle-based system are presented. Data are displayed either as en-face scans, parallel to the sample surface, or as slices through the depth of the sample, with a spatial resolution of about 30 ï ­m. The minimum detectable reflectivity at present is estimated to be about 10-3, which is satisfactory for many inorganic samples. Methods of improving the signal-to- noise ratio for imaging of lower reflectivity samples are discuss

In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip(® )technology

BACKGROUND: Genomic approaches in large animal models (canine, ovine etc) are challenging due to insufficient genomic information for these species and the lack of availability of corresponding microarray platforms. To address this problem, we speculated that conserved interspecies genetic sequences can be experimentally detected by cross-species hybridization. The Affymetrix platform probe redundancy offers flexibility in selecting individual probes with high sequence similarities between related species for gene expression analysis. RESULTS: Gene expression profiles of 40 canine samples were generated using the human HG-U133A GeneChip (U133A). Due to interspecies genetic differences, only 14 ± 2% of canine transcripts were detected by U133A probe sets whereas profiling of 40 human samples detected 49 ± 6% of human transcripts. However, when these probe sets were deconstructed into individual probes and examined performance of each probe, we found that 47% of human probes were able to find their targets in canine tissues and generate a detectable hybridization signal. Therefore, we restricted gene expression analysis to these probes and observed the 60% increase in the number of identified canine transcripts. These results were validated by comparison of transcripts identified by our restricted analysis of cross-species hybridization with transcripts identified by hybridization of total lung canine mRNA to new Affymetrix Canine GeneChip(®). CONCLUSION: The experimental identification and restriction of gene expression analysis to probes with detectable hybridization signal drastically increases transcript detection of canine-human hybridization suggesting the possibility of broad utilization of cross-hybridizations of related species using GeneChip technology

Normal mode splitting and mechanical effects of an optical lattice in a ring cavity

A novel regime of atom-cavity physics is explored, arising when large atom samples dispersively interact with high-finesse optical cavities. A stable far detuned optical lattice of several million rubidium atoms is formed inside an optical ring resonator by coupling equal amounts of laser light to each propagation direction of a longitudinal cavity mode. An adjacent longitudinal mode, detunedby about 3 GHz, is used to perform probe transmission spectroscopy of the system. The atom-cavity coupling for the lattice beams and the probe is dispersive and dissipation results only from the finite photon-storage time. The observation of two well-resolved normal modes demonstrates the regime of strong cooperative coupling. The details of the normal mode spectrum reveal mechanical effects associated with the retroaction of the probe upon the optical lattice.Comment: 4 pages, 3 figure

Fluorescence in situ hybridisation detection of Lactobacillus plantarum group on olives to be used in natural fermentations

At present there are very few studies on the bacterial diversity of olives and on the importance of the microbial species for the fermentation of olives aimed to table olives production. Most of the authors report on the occurrence of Lactobacillus plantarum as principal member of these communities or at least as the species responsible for the fermentation. In this study, fluorescence in situ hybridisation (FISH) with 16S rRNA probes was used to evaluate the occurrence of L. plantarum in olives. A 18-bp oligonucleotide probe was used in FISH experiments to evaluate the specificity of detection among Lactobacillus species. The probe was tested against 30 Lactobacillus species and appeared to be specific for L. plantarum, L. paraplantarum and L. pentosus. The probe was then used to investigate the occurrence of these species in 25 samples of olives (cultivar “Leccino”) collected in Campania region (Southern Italy). The olives were washed in a saline solution and the suspensions were then analysed by FISH and observed by fluorescence microscopy. No hybridisation signal was detected in at least 30 fields of observation when the L. plantarum-specific probe was used, probably due to the low sensitivity of the FISH method. Olive samples were plated on Rogosa agar and about 40% of the samples did not give growth after 5 days. When colony growth was observed, bulk cells from Rogosa agar plates were collected and analysed by DNA extraction followed by 16S rDNA Polymerase chain reaction–denaturing gradient gel electrophoresis (PCR–DGGE). The different microbial species were identified by direct sequencing of DGGE bands. Leuconostoc pseudomesenteroides was the most frequently found species, occurring in more than 50% of the samples that had shown growth on Rogosa agar. The closest relatives of the species of the genera: Leuconostoc, Pediococcus, Pseudomonas and Raoultella were also identified suggesting that guided fermentation by using selected LAB starters is advisable for a safe and desired table olives production