Unraveling the rapid radiation of crested newts, Triturus cristatus superspecies, using complete mitogenomic sequences

Background - The rapid radiation of crested newts (Triturus cristatus superspecies) comprises four morphotypes: 1) the T. karelinii group, 2) T. carnifex - T. macedonicus, 3) T. cristatus and 4) T. dobrogicus. These vary in body build and the number of rib-bearing pre-sacral vertebrae (NRBV). The phylogenetic relationships of the morphotypes have not yet been settled, despite several previous attempts, employing a variety of molecular markers. We here resolve the crested newt phylogeny by using complete mitochondrial genome sequences. Results - Bayesian inference based on the mitogenomic data yields a fully bifurcating, significantly supported tree, though Maximum Likelihood inference yields low support values. The internal branches connecting the morphotypes are short relative to the terminal branches. Seen from the root of Triturus (NRBV = 13), a basal dichotomy separates the T. karelinii group (NRBV = 13) from the remaining crested newts. The next split divides the latter assortment into T. carnifex - T. macedonicus (NRBV = 14) versus T. cristatus (NRBV = 15) and T. dobrogicus (NRBV = 16 or 17). Conclusions - We argue that the Bayesian full mitochondrial DNA phylogeny is superior to previous attempts aiming to recover the crested newt species tree. Furthermore, our new phylogeny involves a maximally parsimonious interpretation of NRBV evolution. Calibrating the phylogeny allows us to evaluate potential drivers for crested newt cladogenesis. The split between the T. karelinii group and the three other morphotypes, at ca. 10.4 Ma, is associated with the separation of the Balkan and Anatolian landmasses (12-9 Ma). No currently known vicariant events can be ascribed to the other two splits, first at ca. 9.3 Ma, separating T. carnifex - T. macedonicus, and second at ca. 8.8 Ma, splitting T. cristatus and T. dobrogicus. The crested newt morphotypes differ in the duration of their annual aquatic period. We speculate on the role that this ecological differentiation could have played during speciatio

A combinatorial approach to angiosperm pollen morphology

Angiosperms (flowering plants) are strikingly diverse. This is clearly expressed in the morphology of their pollen grains, which are characterized by enormous variety in their shape and patterning. In this paper, I approach angiosperm pollen morphology from the perspective of enumerative combinatorics. This involves generating angiosperm pollen morphotypes by algorithmically combining character states and enumerating the results of these combinations. I use this approach to generate 3 643 200 pollen morphotypes, which I visualize using a parallel-coordinates plot. This represents a raw morphospace. To compare real-world and theoretical morphologies, I map the pollen of 1008 species of Neotropical angiosperms growing on Barro Colorado Island (BCI), Panama, onto this raw morphospace. This highlights that, in addition to their well-documented taxonomic diversity, Neotropical rainforests also represent an enormous reservoir of morphological diversity. Angiosperm pollen morphospace at BCI has been filled mostly by pollen morphotypes that are unique to single plant species. Repetition of pollen morphotypes among higher taxa at BCI reflects both constraint and convergence. This combinatorial approach to morphology addresses the complexity that results from large numbers of discrete character combinations and could be employed in any situation where organismal form can be captured by discrete morphological characters

Frequency-dependent and correlational selection pressures have conflicting consequences for assortative mating in a color-polymorphic lizard, Uta stansburiana

Acknowledgments We would like to thank the numerous undergraduate researchers involved with this project for their invaluable assistance in lizard rearing and data collection. We also thank D. Haisten, A. Runemark, Y. Takahashi, and M. Verzijden for insightful comments on the manuscript. This project was funded by National Science Foundation DEBOS-15973 to A.G.M. and B.R.S.Peer reviewedPublisher PD

Separating sexual dimorphism from other morphological variation in a specimen complex of fossil marine reptiles (Reptilia, Ichthyosauriformes, Chaohusaurus).

The Early Triassic Chaohu Fauna from Anhui Province, China, contains the oldest record of Mesozoic marine reptiles, such as Cartorhynchus and Sclerocormus. Most specimens from the fauna belong to the ichthyosauriform Chaohusaurus, more specifically resembling C. chaoxianensis. However, a wide range of morphological variation exists within about 40 skeletons that have been prepared, likely reflecting mixed signals from both sexual and taxonomic differences. We test whether the sexual and taxonomic signals are separable based on quantification, aided by the knowledge of sexual dimorphism in extant marine tetrapods. There are two different suites of dimorphism that divide the specimens differently from each other yet consistently within each suite, resulting in four morphotypes in combination, likely representing two sexes of two taxa. Presumed males have larger organ of prehension sensu Darwin, specifically limbs in the present case, for a given body length. This sexing criterion is supported by the only specimen of a gravid female, which belongs to the morphotype with short limbs. Males also have larger skulls for the trunk length compared to females. This study demonstrates that sexual and taxonomic signals are separable in fossil reptiles, with a sufficient sample size and careful analyses

Pterodactylus scolopaciceps Meyer, 1860 (Pterosauria, Pterodactyloidea) from the Upper Jurassic of Bavaria, Germany:the problem of Cryptic Pterosaur Taxa in early ontogeny

The taxonomy of the Late Jurassic pterodactyloid pterosaur Pterodactylus scolopaciceps Meyer, 1860 from the Solnhofen Limestone Formation of Bavaria, Germany is reviewed. Its nomenclatural history is long and complex, having been synonymised with both P. kochi (Wagner, 1837), and P. antiquus (Sömmerring, 1812). The majority of pterosaur species from the Solnhofen Limestone, including P. scolopaciceps are represented by juveniles. Consequently, specimens can appear remarkably similar due to juvenile characteristics detracting from taxonomic differences that are exaggerated in later ontogeny. Previous morphological and morphometric analyses have failed to separate species or even genera due to this problem, and as a result many species have been subsumed into a single taxon. A hypodigm for P. scolopaciceps, comprising of the holotype (BSP AS V 29 a/b) and material Broili referred to the taxon is described. P. scolopaciceps is found to be a valid taxon, but placement within Pterodactylus is inappropriate. Consequently, the new genus Aerodactylus is erected to accommodate it. Aerodactylus can be diagnosed on account of a unique suite of characters including jaws containing 16 teeth per-jaw, per-side, which are more sparsely distributed caudally and terminate rostral to the nasoantorbital fenestra; dorsal surface of the skull is subtly depressed rostral of the cranial table; rostrum very elongate (RI = ∼7), terminating in a point; orbits correspondingly low and elongate; elongate cervical vertebrae (approximately three times the length of their width); wing-metacarpal elongate, but still shorter than the ulna and first wing-phalanx; and pteroid approximately 65% of the total length of the ulna, straight and extremely thin (less than one third the width of the ulna). A cladistic analysis demonstrates that Aerodactylus is distinct from Pterodactylus, but close to Cycnorhamphus Seeley, 1870, Ardeadactylus Bennett, 2013a and Aurorazhdarcho Frey, Meyer and Tischlinger, 2011, consequently we erect the inclusive taxon Aurorazhdarchidae for their reception

Integrating species distribution models, genetics and morphology to infer species dynamics of New Zealand Phaulacridium grasshoppers : a thesis presented in partial fulfilment of the requirements for the degree of Masters of Science in Zoology at Massey University, Palmerston North, New Zealand

Species comparison studies have used a number of different methods that can contribute to our understanding of processes that influence the differences and similarities observed between species. This thesis describes the geographic distribution, spatial genetics, and morphology of two New Zealand Phaulacridium grasshoppers, the widespread P. marginale and the restricted P. otagoense. The primary focus was on Phaulacridium populations from the region of the southern South Island where the two species ranges overlap, for the purpose of examining the evolutionary and ecological interactions of the species. The geographic distribution of the two species was analysed using the recorded and potential modern distribution of Phaulacridium grasshoppers. Models of environmental envelopes for each species demonstrated that the potential distribution of P. marginale covered the majority of New Zealand. In contrast, the potential distribution of P. otagoense is restricted to patches of land primarily in the southern South Island where this species is known to occur. The phylogeographic structure of Phaulacridium species was analysed using dense population samples. Two main mtDNA COI sequence groups were found, one was shallow but geographically widespread, while the other was more diverse but geographically restricted. Within the southern South Island region both mitochondrial lineages co-occur within a single location. Demographic history analysis suggested that the widespread range of P. marginale is the result of recent population, and the restricted P. otagoense was recently represented in large populations. The morphological variation of Phaulacridium grasshoppers was explored using traditional and geometric techniques. Two distinct morphotypes were apparent, the larger morph was geographically widespread and the smaller morph was restricted to the southern South Island. Both morphotypes co-occur in locations within the southern South Island region. Furthermore, several individuals could not be classified into a discreet morphotype, suggesting that these individuals had a mixture of morphological features, as expected of a hybrid. Comparing the morphological and genetic data from the current study demonstrates the first reported case of introgression between P. marginale and P. otagoense. It is evident that Phaulacridium F1 hybrids exist in the wild, however it is unknown whether these F1 hybrids are fertile and also if F2 hybrids (backcrossed from parental species or F1 hybrids) are viable and fertile

Organic amendment increases arbuscular mycorrhizal fungal diversity in primary coastal dunes

Plastic pots were inserted beneath seedlings of a shallow-rooted C4 grass species, Ischaemum indicum, with and without a root-impenetrable nylon sachet filled with organic matter (OM) amendment, at seven stations along an interrupted belt transect in which plant community and soil chemistry had been previously surveyed. The transect was perpendicular to mean high-water mark (MH-WM) across a primary coastal dune system in Goa, India, where summer monsoon is the predominant weather feature. The Quadrat survey of plant frequency was made in stations when the above-ground biomass was estimated to be highest. Arbuscular mycorrhiza fungal (AMF) spore density and diversity were determined morphologically in amended and control pots soils, and in OM sachet residues, after host-plant desiccation when monsoon rains had ceased. Twenty-seven AM fungal spore morphotypes were isolated from the pots containing OM amended rhizosphere soils, 19 from controls and 14 from OM residues in the sachets. Gigaspora margarita proved to be the dominant spore in all treatments. Eight morphotypes recovered from amended pots were not recovered from the controls. There was an increasing trend in species diversity in amended pots away from MH-WM. Spore recovery from the three regimes showed variable distribution that indicated differing AMF species strategies

Digital Image Analysis of Actinomycetes Colonies as a Potential Aid for Rapid Taxonomic Identification

High frequency isolation of actinomycetes poses a challenge for the taxonomists hence simple and rapid identification methods are required. Our work to catalogue biodiversity of actinomycetes of Goa yielded several distinct morphotypes. After their tentative identification, the feasibility to distinguish these using digital image analyses (DIA) was explored. Digital images of wild colony morphotypes were processed using public domain SCION image analysis software. DIA revealed some intricate digital characters. A combination of these with standard morphological and microscopic characters could be potentially useful for preparing a digital identification key of the actinomycetes strains with potential application in rapid taxonomic identification

Palm phytoliths of mid-elevation Andean forests

Palms are one of the most common tropical plant groups. They are widespread across lowland tropical forests, but many are found in higher altitudes have more constrained environmental ranges. The limited range of these species makes them particularly useful in paleoecological and paleoclimate reconstructions. Palms produce phytoliths, or silica structures, which are found in their vegetative parts (e.g., wood, leaves, etc.). Recent research has shown that several palms in the lowland tropical forests produce phytoliths that are diagnostic to the sub-family or genus-level. Here we characterize Andean palm phytoliths, and determine whether many of these species can also be identified by their silica structures. All of our sampled Andean palm species produced phytoliths, and we were able to characterize several previously unclassified morphotypes. Some species contained unique phytoliths that did not occur in other species, particularly Ceroxylon alpinium, which is indicative of specific climatic conditions. The differences in the morphologies of the Andean species indicate that palm phytolith analysis is particularly useful in paleoecological reconstructions. Future phytolith analyses will allow researchers to track how these palm species with limited environmental ranges have migrated up and down the Andean slopes as a result of past climatic change. The phytolith analyses can track local-scale vegetation dynamics, whereas pollen, which is commonly used in paleoecological reconstructions, reflects regional-scale vegetation change

Direct Electron Microscopy Study on the Morphological Diversity of Bacteriophage Populations in Lake Plußsee

Direct electron microscopy of bacteriophages adsorbed to a carbon film without prior enrichment by specific host strains or concentration by physical or chemical methods was used to study the morphological diversity of natural bacteriophage assemblages in a North German lake. All samples contained a mixture of morphologically different tailed viruses, which were regarded as bacteriophages. Most of them had isometric heads and long noncontractile tails, belonging to morphotype B1 (Siphoviridae). In addition, members of morphotypes A1 (Myoviridae), B2 (Siphoviridae with elongated heads), and C1 (Podoviridae) were present in lower numbers. Only one cubic virus was detected, while no filamentous or pleomorphic phages were found. Up to 11 different phages per sample, and a total of 39 phages when all samples were considered together, could be distinguished by morphological criteria. The total number of phages was estimated to be on the order of 108/ml