Hierarchical Models as Marginals of Hierarchical Models

We investigate the representation of hierarchical models in terms of marginals of other hierarchical models with smaller interactions. We focus on binary variables and marginals of pairwise interaction models whose hidden variables are conditionally independent given the visible variables. In this case the problem is equivalent to the representation of linear subspaces of polynomials by feedforward neural networks with soft-plus computational units. We show that every hidden variable can freely model multiple interactions among the visible variables, which allows us to generalize and improve previous results. In particular, we show that a restricted Boltzmann machine with less than $[ 2(\log(v)+1) / (v+1) ] 2^v-1$ hidden binary variables can approximate every distribution of $v$ visible binary variables arbitrarily well, compared to $2^{v-1}-1$ from the best previously known result.Comment: 18 pages, 4 figures, 2 tables, WUPES'1

Distributed Hierarchical SVD in the Hierarchical Tucker Format

We consider tensors in the Hierarchical Tucker format and suppose the tensor data to be distributed among several compute nodes. We assume the compute nodes to be in a one-to-one correspondence with the nodes of the Hierarchical Tucker format such that connected nodes can communicate with each other. An appropriate tree structure in the Hierarchical Tucker format then allows for the parallelization of basic arithmetic operations between tensors with a parallel runtime which grows like $\log(d)$, where $d$ is the tensor dimension. We introduce parallel algorithms for several tensor operations, some of which can be applied to solve linear equations $\mathcal{A}X=B$ directly in the Hierarchical Tucker format using iterative methods like conjugate gradients or multigrid. We present weak scaling studies, which provide evidence that the runtime of our algorithms indeed grows like $\log(d)$. Furthermore, we present numerical experiments in which we apply our algorithms to solve a parameter-dependent diffusion equation in the Hierarchical Tucker format by means of a multigrid algorithm

Methods of Hierarchical Clustering

We survey agglomerative hierarchical clustering algorithms and discuss efficient implementations that are available in R and other software environments. We look at hierarchical self-organizing maps, and mixture models. We review grid-based clustering, focusing on hierarchical density-based approaches. Finally we describe a recently developed very efficient (linear time) hierarchical clustering algorithm, which can also be viewed as a hierarchical grid-based algorithm.Comment: 21 pages, 2 figures, 1 table, 69 reference

Hierarchical mutual information for the comparison of hierarchical community structures in complex networks

The quest for a quantitative characterization of community and modular structure of complex networks produced a variety of methods and algorithms to classify different networks. However, it is not clear if such methods provide consistent, robust and meaningful results when considering hierarchies as a whole. Part of the problem is the lack of a similarity measure for the comparison of hierarchical community structures. In this work we give a contribution by introducing the {\it hierarchical mutual information}, which is a generalization of the traditional mutual information, and allows to compare hierarchical partitions and hierarchical community structures. The {\it normalized} version of the hierarchical mutual information should behave analogously to the traditional normalized mutual information. Here, the correct behavior of the hierarchical mutual information is corroborated on an extensive battery of numerical experiments. The experiments are performed on artificial hierarchies, and on the hierarchical community structure of artificial and empirical networks. Furthermore, the experiments illustrate some of the practical applications of the hierarchical mutual information. Namely, the comparison of different community detection methods, and the study of the consistency, robustness and temporal evolution of the hierarchical modular structure of networks.Comment: 14 pages and 12 figure