ECoFFeS: A Software Using Evolutionary Computation for Feature Selection in Drug Discovery

Feature selection is of particular importance in the field of drug discovery. Many methods have been put forward for feature selection during recent decades. Among them, evolutionary computation has gained increasing attention owing to its superior global search ability. However, there still lacks a simple and efficient software for drug developers to take advantage of evolutionary computation for feature selection. To remedy this issue, in this paper, a user-friendly and standalone software, named ECoFFeS, is developed. ECoFFeS is expected to lower the entry barrier for drug developers to deal with feature selection problems at hand by using evolutionary algorithms. To the best of our knowledge, it is the first software integrating a set of evolutionary algorithms (including two modified evolutionary algorithms proposed by the authors) with various evaluation combinations for feature selection. Specifically, ECoFFeS considers both single-objective and multi-objective evolutionary algorithms, and both regression- and classification-based models to meet different requirements. Five data sets in drug discovery are collected in ECoFFeS. In addition, to reduce the total analysis time, the parallel execution technique is incorporated into ECoFFeS. The source code of ECoFFeS can be available from https://github.com/JiaweiHuang/ECoFFeS/

The Transformation Of Trust In China’s Alternative Food Networks: Disruption, Reconstruction, And Development

Food safety issues in China have received much scholarly attention, yet few studies systematically examined this matter through the lens of trust. More importantly, little is known about the transformation of different types of trust in the dynamic process of food production, provision, and consumption. We consider trust as an evolving interdependent relationship between different actors. We used the Beijing County Fair, a prominent ecological farmers’ market in China, as an example to examine the transformation of trust in China’s alternative food networks. We argue that although there has been a disruption of institutional trust among the general public since 2008 when the melamine-tainted milk scandal broke out, reconstruction of individual trust and development of organizational trust have been observed, along with the emergence and increasing popularity of alternative food networks. Based on more than six months of fieldwork on the emerging ecological agriculture sector in 13 provinces across China as well as monitoring of online discussions and posts, we analyze how various social factors—including but not limited to direct and indirect reciprocity, information, endogenous institutions, and altruism—have simultaneously contributed to the transformation of trust in China’s alternative food networks. The findings not only complement current social theories of trust, but also highlight an important yet understudied phenomenon whereby informal social mechanisms have been partially substituting for formal institutions and gradually have been building trust against the backdrop of the food safety crisis in China.published_or_final_versio

A pore-expanded supramolecular organic framework and its enrichment of photosensitizers and catalysts for visible-light-induced hydrogen production

A pore-expanded three-dimensional supramolecular organic framework SOF-bpb, with a previously unattained aperture size of 3.6 nm, has been constructed in water from the co-Assembly of cucurbit[8]uril (CB[8]) and a tetraphenylmethane-cored 1,4-bis(pyridin-4-yl)-benzene-Appended building block M1. The periodicity of SOF-bpb in water and in the solid state has been confirmed using synchrotron X-ray scattering and diffraction experiments. SOF-bpb can adsorb anionic and neutral Ru complex photosensitizers and anionic Wells-Dawson-Type and Keggin-Type polyoxometalates (POMs). The adsorption leads to an important enrichment effect, which remarkably increases the catalytic efficiency of the Ru complex-POM systems for visible light-induced reduction of protons to produce H . The expanded aperture of SOF-bpb also facilitates light absorption of the adsorbed Ru complex photosensitizers and electron transfer between excited complexes and the POM catalysts, leading to enhanced photocatalytic activities as compared with the prototypical SOF that has an aperture size of 2.1 nm. 2+ 2+ 2+

Relaxed 2-D Principal Component Analysis by LpL_p Norm for Face Recognition

A relaxed two dimensional principal component analysis (R2DPCA) approach is proposed for face recognition. Different to the 2DPCA, 2DPCA-$L_1$ and G2DPCA, the R2DPCA utilizes the label information (if known) of training samples to calculate a relaxation vector and presents a weight to each subset of training data. A new relaxed scatter matrix is defined and the computed projection axes are able to increase the accuracy of face recognition. The optimal $L_p$-norms are selected in a reasonable range. Numerical experiments on practical face databased indicate that the R2DPCA has high generalization ability and can achieve a higher recognition rate than state-of-the-art methods.Comment: 19 pages, 11 figure

Microhoneycomb monoliths prepared by the unidirectional freeze-drying of cellulose nanofiber based sols: Method and extensions

© 2018 Journal of Visualized Experiments. Monolithic honeycomb structures have been attractive to multidisciplinary fields due to their high strength-to-weight ratio. Particularly, microhoneycomb monoliths (MHMs) with micrometer-scale channels are expected as efficient platforms for reactions and separations because of their large surface areas. Up to now, MHMs have been prepared by a unidirectional freeze-drying (UDF) method only from very limited precursors. Herein, we report a protocol from which a series of MHMs consisting of different components can be obtained. Recently, we found that cellulose nanofibers function as a distinct structure-directing agent towards the formation of MHMs through the UDF process. By mixing the cellulose nanofibers with water soluble substances which do not yield MHMs, a variety of composite MHMs can be prepared. This significantly enriches the chemical constitution of MHMs towards versatile applications

New insight into fouling behavior and foulants accumulation property of cake sludge in a full-scale membrane bioreactor

© 2016 Elsevier B.V.. Cake sludge attached on membrane surfaces was collected and characterized in a full scale membrane bioreactor (MBR) compared with bulk sludge. The morphological, chemical and microbial properties were examined through microscopic observations, particle size distribution (PSD) analysis, chemical analysis, Fourier transform infrared (FTIR) spectroscopy, scanning electron microscopy (SEM) and energy-diffusive X-ray (EDX) analysis, specific oxygen utilization rate (SOUR) measurements and Biolog assay. The results showed that fiber-like substances might have served as the skeleton of larger size aggregates in cake sludge. Moreover, much more polysaccharides and inorganic elements such as multivalent cations were accumulated in cake sludge than proteins and humics. Cake sludge showed lower microbial activity for aerobic degradation than bulk sludge, but higher metabolic activity for the degradation of refractory substances (aromatic proteins and humics) other than polysaccharides. Based on batch filtration experiments, it was found that cake sludge had much higher cake layer fouling potential but lower membrane pore blocking resistance, probably due to the heterogeneous structure of cake sludge resulting from accumulation and interaction of various inorganic and organic foulants. This investigation could assist in obtaining a better understanding of the fouling behavior and foulants accumulation properties of cake sludge in the full-scale MBRs

Removal of single point diamond-turning marks by abrasive jet polishing

Author name used in this publication: C. F. Cheung2010-2011 > Academic research: refereed > Publication in refereed journalVersion of RecordPublishe