8 research outputs found

    Graphical summary of genome-wide association analysis for TRS in a Han Chinese population.

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    <p><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0033598#s2" target="_blank">Results</a> (−log<sub>10</sub><i>P</i>) are shown in chromosomal order for 694,436 SNPs which were tested in 522 cases and 806 controls by using Affymetrix SNP 6.0 Array. The horizontal line indicates a <i>P</i>-value of 10<sup>−5</sup>.</p

    Refined regional association plots.

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    <p>For each plot of the four clusters ((A) <i>SLAMF1</i>, (B) <i>NFKB1</i>, (C) <i>DOCK4</i>, and (D) <i>RIPK4</i>), the −log<sub>10</sub><i>P</i> values for the trend test from Affymetrix SNP 6.0 Array in 522 cases and 806 controls are plotted as red diamond according to their genomic position (NCBI Build 36.3). The SNPs with the strongest signal are represented as blue diamonds. The recombination rates (right y-axis) based on the Chinese HapMap population is plotted as green lines to reflect the local LD structure around the SNPs. The dashed horizontal line indicates a <i>P</i>-value of 10<sup>−5</sup>.</p

    Results of GWAS for TRS in Han population.

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    <p>SNP position were indexed to the forward of NCBI Build 36.3.</p><p>ch: chromosome.</p><p>RA: Risk allele, the allele with higher frequency in schizophrenia as compared with controls;</p><p>RAF: risk allele frequency.</p><p>F: frequency.</p><p><i>P</i><sub>trend</sub>: P values obtained from the initial GWA analysis on 522 cases and 806 controls.</p><p><i>P</i><sub>joint</sub>: P values calculated from joint analysis on 804 cases and 806 controls.</p><p>OR, odds ratio for risk allele.</p
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