Effect of different seeding methods on green manure biomass, soil properties and rice yield in rice-based cropping systems

The cultivation of green manure crops plays an important role in soil quality and the sustainability of agricultural systems. Field experiments were conducted during one season (2007/2008) to evaluate the effects of different seeding methods on the biomass and N production of hairy vetch (Vicia villosa) and barley (Hordeum vuglare). The effects of treatments on rice yield and its components were also investigated. Specifically, the following four treatments were evaluated: broadcasting before rice harvesting (BBRH), partial tillage seeding (PTS), group seeding (GS) and drill seeding (DS). The overall results showed the following ranking of biomass and nitrogen production of hairy vetch by different seeding methods: BBRH > PTS > DS > GS. Additionally, biomass and nitrogen production of barley was lower than those of hairy vetch at all tested seeding treatments. BBRH and PTS treatments led to an increase in soil bulk density, porosity and soil organic content. The application of green manure with BBRH and PTS treatments led to a significant increase in rice yield (5,330 and 5,320 kg ha-1) when compared to conventional fertilization. Based on the results, BBRH and PTS are good practices for production of green manure in paddy soil. Chemical fertilizers can be replaced with hairy vetch as green manure in rice-based cropping systems.Key words: Green manure, rice, biomass, soil property, seeding method

Epitope Mapping of Antibodies Suggests the Novel Membrane Topology of B-Cell Receptor Associated Protein 31 on the Cell Surface of Embryonic Stem Cells: The Novel Membrane Topology of BAP31

When located in the endoplasmic reticulum (ER) membrane, B-cell receptor associated protein 31 (BAP31) is involved in the export of secreted proteins from the ER to the plasma membrane. In a previous study, we generated two monoclonal antibodies (mAbs), 297-D4 and 144-A8, that bound to surface molecules on human embryonic stem cells (hESCs), but not to surface molecules on mouse embryonic stem cells (mESCs). Subsequent studies revealed that the mAbs recognized BAP31 on the surface of hESCs. To investigate the membrane topology of BAP31 on the cell surface, we first examined the epitope specificity of 297-D4 and 144-A8, as well as a polyclonal anti-BAP31 antibody (alpha-BAP31). We generated a series of GST-fused BAP31 mutant proteins in which BAP31 was serially deleted at the C-terminus. GST-fused BAP31 mutant proteins were then screened to identify the epitopes targeted by the antibodies. Both 297-D4 and 144-A8 recognized C-terminal residues 208-217, while alpha-BAP31 recognized C-terminal residues 165-246, of BAP31 on hESCs, suggesting that the C-terminal domain of BAP31 is exposed on the cell surface. The polyclonal antibody alpha-BAP31 bound to mESCs, which confirmed that the C-terminal domain of BAP31 is also exposed on the surface of these cells. Our results show for the first time the novel membrane topology of cell surface-expressed BAP31 as the extracellular exposure of the BAP31 C-terminal domain was not predicted from previous studies.published_or_final_versio

Single Image Super-Resolution Using Lightweight CNN with Maxout Units

Rectified linear units (ReLU) are well-known to be helpful in obtaining faster convergence and thus higher performance for many deep-learning-based applications. However, networks with ReLU tend to perform poorly when the number of filter parameters is constrained to a small number. To overcome it, in this paper, we propose a novel network utilizing maxout units (MU), and show its effectiveness on super-resolution (SR) applications. In general, the MU has been known to make the filter sizes doubled in generating the feature maps of the same sizes in classification problems. In this paper, we first reveal that the MU can even make the filter sizes halved in restoration problems thus leading to compaction of the network sizes. To show this, our SR network is designed without increasing the filter sizes with MU, which outperforms the state of the art SR methods with a smaller number of filter parameters. To the best of our knowledge, we are the first to incorporate MU into SR applications and show promising performance results. In MU, feature maps from a previous convolutional layer are divided into two parts along channels, which are then compared element-wise and only their max values are passed to a next layer. Along with some interesting properties of MU to be analyzed, we further investigate other variants of MU and their effects. In addition, while ReLU have a trouble for learning in networks with a very small number of convolutional filter parameters, MU do not. For SR applications, our MU-based network reconstructs high-resolution images with comparable quality compared to previous deep-learning-based SR methods, with lower filter parameters.Comment: ACCV201

Gene conversion in human rearranged immunoglobulin genes

Over the past 20 years, many DNA sequences have been published suggesting that all or part of the V<sub>H</sub> segment of a rearranged immunoglobulin gene may be replaced in vivo. Two different mechanisms appear to be operating. One of these is very similar to primary V(D)J recombination, involving the RAG proteins acting upon recombination signal sequences, and this has recently been proven to occur. Other sequences, many of which show partial V<sub>H</sub> replacements with no addition of untemplated nucleotides at the V<sub>H</sub>–V<sub>H</sub> joint, have been proposed to occur by an unusual RAG-mediated recombination with the formation of hybrid (coding-to-signal) joints. These appear to occur in cells already undergoing somatic hypermutation in which, some authors are convinced, RAG genes are silenced. We recently proposed that the latter type of V<sub>H</sub> replacement might occur by homologous recombination initiated by the activity of AID (activation-induced cytidine deaminase), which is essential for somatic hypermutation and gene conversion. The latter has been observed in other species, but not in human Ig genes, so far. In this paper, we present a new analysis of sequences published as examples of the second type of rearrangement. This not only shows that AID recognition motifs occur in recombination regions but also that some sequences show replacement of central sections by a sequence from another gene, similar to gene conversion in the immunoglobulin genes of other species. These observations support the proposal that this type of rearrangement is likely to be AID-mediated rather than RAG-mediated and is consistent with gene conversion

Study of the Baryon-Antibaryon Low-Mass Enhancements in Charmless Three-body Baryonic B Decays

The angular distributions of the baryon-antibaryon low-mass enhancements seen in the charmless three-body baryonic B decays B+ -> p pbar K+, B0 -> p pbar Ks, and B0 -> p Lambdabar pi- are reported. A quark fragmentation interpretation is supported, while the gluonic resonance picture is disfavored. Searches for the Theta+ and Theta++ pentaquarks in the relevant decay modes and possible glueball states G with 2.2 GeV/c2 < M-ppbar < 2.4 GeV/c2 in the ppbar systems give null results. We set upper limits on the products of branching fractions, B(B0 -> Theta+ p)\times B(Theta+ -> p Ks) Theta++ pbar) \times B(Theta++ -> p K+) G K+) \times B(G -> p pbar) < 4.1 \times 10^{-7} at the 90% confidence level. The analysis is based on a 140 fb^{-1} data sample recorded on the Upsilon(4S) resonance with the Belle detector at the KEKB asymmetric-energy e+e- collider.Comment: 14 pages, 13 figure files, update of hep-ex/0409010 for journal submisssio

The Expression and Localization of N-Myc Downstream-Regulated Gene 1 in Human Trophoblasts

The protein N-Myc downstream-regulated gene 1 (NDRG1) is implicated in the regulation of cell proliferation, differentiation, and cellular stress response. NDRG1 is expressed in primary human trophoblasts, where it promotes cell viability and resistance to hypoxic injury. The mechanism of action of NDRG1 remains unknown. To gain further insight into the intracellular action of NDRG1, we analyzed the expression pattern and cellular localization of endogenous NDRG1 and transfected Myc-tagged NDRG1 in human trophoblasts exposed to diverse injuries. In standard conditions, NDRG1 was diffusely expressed in the cytoplasm at a low level. Hypoxia or the hypoxia mimetic cobalt chloride, but not serum deprivation, ultraviolet (UV) light, or ionizing radiation, induced the expression of NDRG1 in human trophoblasts and the redistribution of NDRG1 into the nucleus and cytoplasmic membranes associated with the endoplasmic reticulum (ER) and microtubules. Mutation of the phosphopantetheine attachment site (PPAS) within NDRG1 abrogated this pattern of redistribution. Our results shed new light on the impact of cell injury on NDRG1 expression patterns, and suggest that the PPAS domain plays a key role in NDRG1's subcellular distribution. © 2013 Shi et al

Causes of Abnormal Ca2+ Transients in Guinea Pig Pathophysiological Ventricular Muscle Revealed by Ca2+ and Action Potential Imaging at Cellular Level

BACKGROUND: Abnormal Ca(2+) transients are often observed in heart muscles under a variety of pathophysiological conditions including ventricular tachycardia. To clarify whether these abnormal Ca(2+) transients can be attributed to abnormal action potential generation or abnormal Ca(2+) handling/excitation-contraction (EC) coupling, we developed a procedure to determine Ca(2+) and action potential signals at the cellular level in isolated heart tissues. METHODOLOGY/PRINCIPAL FINDINGS: After loading ventricular papillary muscle with rhod-2 and di-4-ANEPPS, mono-wavelength fluorescence images from rhod-2 and ratiometric images of two wavelengths of emission from di-4-ANEPPS were sequentially obtained. To mimic the ventricular tachycardia, the ventricular muscles were field-stimulated in non-flowing Krebs solution which elicited abnormal Ca(2+) transients. For the failed and alternating Ca(2+) transient generation, there were two types of causes, i.e., failed or abnormal action potential generation and abnormal EC coupling. In cells showing delayed initiation of Ca(2+) transients with field stimulation, action potential onset was delayed and the rate of rise was slower than in healthy cells. Similar delayed onset was also observed in the presence of heptanol, an inhibitor of gap junction channels but having a non-specific channel blocking effect. A Na(+) channel blocker, on the other hand, reduced the rate of rise of the action potentials but did not result in desynchronization of the action potentials. The delayed onset of action potentials can be explained primarily by impaired gap junctions and partly by Na(+) channel inactivation. CONCLUSIONS/SIGNIFICANCE: Our results indicate that there are multiple patterns for the causes of abnormal Ca(2+) signals and that our methods are useful for investigating the physiology and pathophysiology of heart muscle

Search for CP violation in the decay B0->D*+-D-+

We report a search for CP-violating asymmetry in B0 -> D*+- D-+ decays. The analysis employs two methods of B0 reconstruction: full and partial. In the full reconstruction method all daughter particles of the B0 are required to be detected; the partial reconstruction technique requires a fully reconstructed D- and only a slow pion from the D*+ -> D0 pi_slow+ decay. From a fit to the distribution of the time interval corresponding to the distance between two B meson decay points we calculate the CP-violating parameters and find the significance of nonzero CP asymmetry to be 2.7 standard deviations.Comment: 4 pages, 3 figure