Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-1

Ome assembly. In green: RH linkage group assignment of the supercontigs; LG: linkage group, ND: not done, NLG: new linkage group. A: position of all chicken supercontigs larger than 10 kb on HSA1 in the May 2004 Hg17 assembly. Supercontigs with a low % (G+C) were not selected for genotyping. B: position of the supercontigs genotyped in the RH panel on HSA1 in the March 2006 Hg18 assembly.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-3

Gion 144.1–159.5 Mb [37]. For each marker on the framework map, a line joins both positions (cR and Mb) together. Framework markers are in red. Left: conservation of synteny between HSA1 and chicken chromosomes. Pink: GGA25, blue: GGA08, orange: GGA01.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-2

Ochromosomes of similar size as the one hybridised by the BAC clone from E26C13 are shown: (a): BAC clones for GGA19, GGA21, GGA22, GGA23 (red) and BAC clone bw90F5 for E26C13 (green). (b): BAC clones for GGA24, GGA26, GGA27, GGA28 (red) and BAC clone bw90F5 for E26C13 (green).<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-0

Ck of 20% and a maximum overlap with the chicken self-alignment table of 20%. A: schematic representation of the filtering and intersection queries in the UCSC table browser. B: screenshot of the UCSC browser, representing a supercontig selected with the above criteria. The overlap with the human alignment net track is about 75% and there is no overlap with another chicken region. The quality scores and repeat element tracks are displayed to guide the choice of PCR primers.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-6

Ome assembly. In green: RH linkage group assignment of the supercontigs; LG: linkage group, ND: not done, NLG: new linkage group. A: position of all chicken supercontigs larger than 10 kb on HSA1 in the May 2004 Hg17 assembly. Supercontigs with a low % (G+C) were not selected for genotyping. B: position of the supercontigs genotyped in the RH panel on HSA1 in the March 2006 Hg18 assembly.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-5

Ck of 20% and a maximum overlap with the chicken self-alignment table of 20%. A: schematic representation of the filtering and intersection queries in the UCSC table browser. B: screenshot of the UCSC browser, representing a supercontig selected with the above criteria. The overlap with the human alignment net track is about 75% and there is no overlap with another chicken region. The quality scores and repeat element tracks are displayed to guide the choice of PCR primers.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution-9

Me paint hybridizations superimposed. The centromere is arrowed.<p><b>Copyright information:</b></p><p>Taken from "Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution"</p><p>http://www.biomedcentral.com/1471-2164/9/168</p><p>BMC Genomics 2008;9():168-168.</p><p>Published online 14 Apr 2008</p><p>PMCID:PMC2375447.</p><p></p

Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution-0

Turkey metaphase (chromosome numbers are labeled with arrows and chicken (GGA) orthologues are indicated in brackets).<p><b>Copyright information:</b></p><p>Taken from "Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution"</p><p>http://www.biomedcentral.com/1471-2164/9/168</p><p>BMC Genomics 2008;9():168-168.</p><p>Published online 14 Apr 2008</p><p>PMCID:PMC2375447.</p><p></p

Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution-5

Cy5). Points above the midline represent signals in the Cy3 range; points below the midline represent signals in the Cy5 range. The results indicate failure of hybridization for the MGA9 chromosome paint but successful hybridization for the other three. All results are consistent with centromeric breakpoint/fusion points.<p><b>Copyright information:</b></p><p>Taken from "Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution"</p><p>http://www.biomedcentral.com/1471-2164/9/168</p><p>BMC Genomics 2008;9():168-168.</p><p>Published online 14 Apr 2008</p><p>PMCID:PMC2375447.</p><p></p

Chromosome paints for turkey chromosomes MGA3 (red) and MGA6 (green) hybridized on chicken (GGA) metaphase chromosomes suggesting that the breakpoint is centromeric

<p><b>Copyright information:</b></p><p>Taken from "Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution"</p><p>http://www.biomedcentral.com/1471-2164/9/168</p><p>BMC Genomics 2008;9():168-168.</p><p>Published online 14 Apr 2008</p><p>PMCID:PMC2375447.</p><p></p