8 research outputs found
Projector Augmented Wave Method Incorporated into Gauss-Type Atomic Orbital Based Density Functional Theory
The
Projector Augmented Wave (PAW) method developed by BloÌchl
is well recognized as an efficient, accurate pseudopotential approach
in solid-state density functional theory (DFT) calculations with the
plane-wave basis. Here we present an approach to incorporate the PAW
method into the Gauss-type function (GTF) based DFT implementation,
which is widely used for molecular quantum chemistry calculations.
The nodal and high-exponent GTF components of valence molecular orbitals
(MOs) are removed or pseudized by the ultrasoft PAW treatment, while
there is elaborate transparency to construct an accurate and well-controlled
pseudopotential from all-electron atomic description and to reconstruct
an all-electron form of valence MOs from the pseudo MOs. The smoothness
of the pseudo MOs should benefit the efficiency of GTF-based DFT calculations
in terms of elimination of high-exponent primitive GTFs and reduction
of grid points in the numerical quadrature. The processes of the PAW
method are divided into basis-independent and -dependent parts. The
former is carried out using the previously developed PAW libraries libpaw and atompaw. The present scheme is implemented
by incorporating libpaw into the conventional GTF-based DFT
solver. The details of the formulations and implementations of GTF-related
PAW procedures are presented. The test calculations are shown for
illustrating the performance. With the near-complete GTF basis at
the cc-pVQZ level, the total energies obtained using our PAW method
with suited frozen core treatments converge to those with the conventional
all-electron GTF-based method with a rather small absolute error
Fully Internally Contracted Multireference Configuration Interaction Theory Using Density Matrix Renormalization Group: A Reduced-Scaling Implementation Derived by Computer-Aided Tensor Factorization
We present an extended
implementation of the multireference configuration interaction (MRCI)
method combined with the quantum-chemical density matrix renormalization
group (DMRG). In the previous study, we introduced the combined theory,
referred to as DMRG-MRCI, as a method to calculate high-level dynamic
electron correlation on top of the DMRG wave function that accounts
for active-space (or strong) correlation using a large number of active
orbitals. The DMRG-MRCI method is built on the full internal-contraction
scheme for the compact reference treatment and on the cumulant approximation
for the treatment of the four-particle rank reduced density matrix
(4-RDM). The previous implementation achieved the MRCI calculations
with the active space (24<i>e</i>,24<i>o</i>),
which are deemed the record largest, whereas the inherent <i>N</i><sub>act</sub><sup>8</sup> Ă <i>N</i> complexity of computation was found a
hindrance to using further large active space. In this study, an extended
optimization of the tensor contractions is developed by explicitly
incorporating the rank reduction of the decomposed form of the cumulant-approximated
4-RDM into the factorization. It reduces the computational scaling
(to <i>N</i><sub>act</sub><sup>7</sup> Ă <i>N</i>) as well as the cache-miss penalty
associated with direct evaluation of complex cumulant reconstruction.
The present scheme, however, faces the increased complexity of factorization
patterns for optimally implementing the tensor contraction terms involving
the decomposed 4-RDM objects. We address this complexity using the
enhanced symbolic manipulation computer program for deriving and coding
programmable equations. The new DMRG-MRCI implementation is applied
to the determination of the stability of the ironÂ(IV)-oxo porphyrin
relative to the ironÂ(V) electronic isomer (electromer) using the active
space (29<i>e</i>,29<i>o</i>) (including four
second d-shell orbitals of iron) with triple-ζ-quality atomic
orbital basis sets. The DMRG-cu(4)-MRCI+Q model is shown to favor
the triradicaloid ironÂ(IV)-oxo state as the lowest energy state and
characterize the ironÂ(V) electromer as thermally inaccessible, supporting
the earlier experimental and density functional studies. This conflicts
with the previous MR calculations using the restricted active-space
second-order perturbation theory (RASPT2) with the similar-size active
space (29<i>e</i>,28<i>o</i>) reported by Pierloot
et al. (RadonÌ, M.; Broclawik, E.; Pierloot, K. J. Chem. Theory Comput. 2011, 7, 898), showing that the hypothetical
ironÂ(V) state indicated by recent laser flash photolysis (LFP) studies
is likely thermally accessible because of its underestimated relative
energy
Computational Evidence of Inversion of <sup>1</sup>L<sub>a</sub> and <sup>1</sup>L<sub>b</sub>âDerived Excited States in Naphthalene Excimer Formation from <i>ab Initio</i> Multireference Theory with Large Active Space: DMRG-CASPT2 Study
The naphthalene molecule
has two important lowest-lying singlet
excited states, denoted <sup>1</sup>L<sub>a</sub> and <sup>1</sup>L<sub>b</sub>. Association of the excited and ground state monomers
yields a metastable excited dimer (<i>excimer</i>), which
emits characteristic fluorescence. Here, we report a first computational
result based on <i>ab initio</i> theory to corroborate that
the naphthalene excimer fluorescence is <sup>1</sup>L<sub>a</sub> parentage,
resulting from inversion of <sup>1</sup>L<sub>a</sub> and <sup>1</sup>L<sub>b</sub>-derived dimer states. This inversion was hypothesized
by earlier experimental studies; however, it has not been confirmed
rigorously. In this study, the advanced multireference (MR) theory
based on the density matrix renormalization group that enables using
unprecedented large-size active space for describing significant electron
correlation effects is used to provide accurate potential energy curves
(PECs) of the excited states. The results evidenced the inversion
of the PECs and accurately predicted transition energies for excimer
fluorescence and monomer absorption. Traditional MR calculations with
smaller active spaces and single-reference theory calculations exhibit
serious inconsistencies with experimental observations
More Ï Electrons Make a Difference: Emergence of Many Radicals on Graphene Nanoribbons Studied by <i>Ab Initio</i> DMRG Theory
Graphene nanoribbons (GNRs), also seen as rectangular
polycyclic
aromatic hydrocarbons, have been intensively studied to explore their
potential applicability as superior organic semiconductors with high
mobility. The difficulty arises in the synthesis or isolation of GNRs
with increased conjugate length, GNRs being known to have radical
electrons on their zigzag edges. Here, we use a most advanced <i>ab initio</i> theory based on density matrix renormalization
group (DMRG) theory to show the emerging process of how GNRs develop
electronic states from nonradical to radical characters with increasing
ribbon length. We show the mesoscopic size effect that comes into
play in quantum many-body interactions of Ï electrons, which
is responsible for the polyradical nature. An analytic form is presented
to model the size dependence of the number of radicals for arbitrary-length
GNRs. These results and associated insights deepen the understanding
of carbon-based chemistry and offer useful information for the synthesis
and design of stable and functional GNRs
Multireference Ab Initio Density Matrix Renormalization Group (DMRG)-CASSCF and DMRG-CASPT2 Study on the Photochromic Ring Opening of Spiropyran
The
photochromic ring-opening reaction of spiropyran has been revisited
at the multireference CASSCF and CASPT2 level with a CASÂ(22e,20o)
active space, in combination with density matrix renormalization group
(DMRG) methods. The accuracy of the DMRG-CASSCF and DMRG-CASPT2 calculations,
with respect to the number of renormalized states, the number of roots
in state-averaged wave functions, and the number basis functions,
was examined. For the current system, chemically accurate results
can be obtained with a relatively small number of renormalized states.
The nature and vertical excitation energies of the excited (S<sub>1</sub> and S<sub>2</sub>) states are consistent with conventional
CASÂ(or RAS)ÂPT2 with medium active spaces. The capability of the DMRG-CASSCF
method in the optimization of molecular geometry is demonstrated for
the first time. The computation costs (several hours per optimization
cycle) are comparable with that of the conventional CASSCF geometry
optimization with small active space. Finally, the DMRG-PT2 computed
S<sub>1</sub>-MEP for the CâO and CâN bond-cleavage
processes show good agreement with our previous calculations with
a CASÂ(12e,10o) active space [Liu, F.; Morokuma, K. <i>J. Am.
Chem. Soc.</i> <b>2013</b>, <i>135</i>, 10693â10702].
Especially, the role of the HOOP valleys in the S<sub>1</sub>âââS<sub>0</sub> nonadiabatic decay has been confirmed
Multistate Complete-Active-Space Second-Order Perturbation Theory Based on Density Matrix Renormalization Group Reference States
We
present the development of the multistate multireference second-order
perturbation theory (CASPT2) with multiroot references, which are
described using the density matrix renormalization group (DMRG) method
to handle a large active space. The multistate first-order wave functions
are expanded into the internally contracted (IC) basis of the single-state
single-reference (SS-SR) scheme, which is shown to be the most feasible
variant to use DMRG references. The feasibility of the SS-SR scheme
comes from two factors: first, it formally does not require the fourth-order
transition reduced density matrix (TRDM) and second, the computational
complexity scales linearly with the number of the reference states.
The extended multistate (XMS) treatment is further incorporated, giving
suited treatment of the zeroth-order Hamiltonian despite the fact
that the SS-SR based IC basis is not invariant with respect to the
XMS rotation. In addition, the state-specific fourth-order reduced
density matrix (RDM) is eliminated in an approximate fashion using
the cumulant reconstruction formula, as also done in the previous
state-specific DMRG-cu(4)-CASPT2 approach. The resultant method, referred
to as DMRG-cu(4)-XMS-CASPT2, uses the RDMs and TRDMs of up to third-order
provided by the DMRG calculation. The multistate potential energy
curves of the photoisomerization of diarylethene derivatives with
CASÂ(26e,24o) are presented to illustrate the applicability of our
theoretical approach
Reactivity of the Binuclear Non-Heme Iron Active Site of Î<sup>9</sup> Desaturase Studied by Large-Scale Multireference <i>Ab Initio</i> Calculations
The
results of density matrix renormalization group complete active
space self-consistent field (DMRG-CASSCF) and second-order perturbation
theory (DMRG-CASPT2) calculations are presented on various structural
alternatives for the OâO and first CâH activating step
of the catalytic cycle of the binuclear nonheme iron enzyme Î<sup>9</sup> desaturase. This enzyme is capable of inserting a double
bond into an alkyl chain by double hydrogen (H) atom abstraction using
molecular O<sub>2</sub>. The reaction step studied here is presumably
associated with the highest activation barrier along the full pathway;
therefore, its quantitative assessment is of key importance to the
understanding of the catalysis. The DMRG approach allows unprecedentedly
large active spaces for the explicit correlation of electrons in the
large part of the chemically important valence space, which is apparently <i>conditio sine qua non</i> for obtaining well-converged reaction
energetics. The derived reaction mechanism involves protonation of
the previously characterized 1,2-Ό peroxy Fe<sup>III</sup>Fe<sup>III</sup> (<b>P</b>) intermediate to a 1,1-Ό hydroperoxy
species, which abstracts an H atom from the C<sub>10</sub> site of
the substrate. An Fe<sup>IV</sup>-oxo unit is generated concomitantly,
supposedly capable of the second H atom abstraction from C<sub>9</sub>. In addition, several popular DFT functionals were compared to the
computed DMRG-CASPT2 data. Notably, many of these show a preference
for heterolytic CâH cleavage, erroneously predicting substrate
hydroxylation. This study shows that, despite its limitations, DMRG-CASPT2
is a significant methodological advancement toward the accurate computational
treatment of complex bioinorganic systems, such as those with the
highly open-shell diiron active sites