Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-1

Ome assembly. In green: RH linkage group assignment of the supercontigs; LG: linkage group, ND: not done, NLG: new linkage group. A: position of all chicken supercontigs larger than 10 kb on HSA1 in the May 2004 Hg17 assembly. Supercontigs with a low % (G+C) were not selected for genotyping. B: position of the supercontigs genotyped in the RH panel on HSA1 in the March 2006 Hg18 assembly.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-0

Ck of 20% and a maximum overlap with the chicken self-alignment table of 20%. A: schematic representation of the filtering and intersection queries in the UCSC table browser. B: screenshot of the UCSC browser, representing a supercontig selected with the above criteria. The overlap with the human alignment net track is about 75% and there is no overlap with another chicken region. The quality scores and repeat element tracks are displayed to guide the choice of PCR primers.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-2

Ochromosomes of similar size as the one hybridised by the BAC clone from E26C13 are shown: (a): BAC clones for GGA19, GGA21, GGA22, GGA23 (red) and BAC clone bw90F5 for E26C13 (green). (b): BAC clones for GGA24, GGA26, GGA27, GGA28 (red) and BAC clone bw90F5 for E26C13 (green).<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-6

Ome assembly. In green: RH linkage group assignment of the supercontigs; LG: linkage group, ND: not done, NLG: new linkage group. A: position of all chicken supercontigs larger than 10 kb on HSA1 in the May 2004 Hg17 assembly. Supercontigs with a low % (G+C) were not selected for genotyping. B: position of the supercontigs genotyped in the RH panel on HSA1 in the March 2006 Hg18 assembly.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-3

Gion 144.1–159.5 Mb [37]. For each marker on the framework map, a line joins both positions (cR and Mb) together. Framework markers are in red. Left: conservation of synteny between HSA1 and chicken chromosomes. Pink: GGA25, blue: GGA08, orange: GGA01.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p

Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping-5

Ck of 20% and a maximum overlap with the chicken self-alignment table of 20%. A: schematic representation of the filtering and intersection queries in the UCSC table browser. B: screenshot of the UCSC browser, representing a supercontig selected with the above criteria. The overlap with the human alignment net track is about 75% and there is no overlap with another chicken region. The quality scores and repeat element tracks are displayed to guide the choice of PCR primers.<p><b>Copyright information:</b></p><p>Taken from "Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping"</p><p>http://www.biomedcentral.com/1471-2164/9/129</p><p>BMC Genomics 2008;9():129-129.</p><p>Published online 17 Mar 2008</p><p>PMCID:PMC2275740.</p><p></p