SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis-7

Nberg Equilibrium test are shown in the table. Triggering tabs for Data Import, Haplotype Estimation, LD Blocking and Case-Control Study are shown on the left panel.<p><b>Copyright information:</b></p><p>Taken from "SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis"</p><p>http://www.biomedcentral.com/1471-2105/9/290</p><p>BMC Bioinformatics 2008;9():290-290.</p><p>Published online 23 Jun 2008</p><p>PMCID:PMC2453143.</p><p></p

SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis-6

D by SNPAnalyzer 2.0, and (C) African American ethnic group and (D) Asian American ethnic group by Haploview program. The structures of LD blocks consisting of 100 SNPs are produced by (E) SNPAnalyzer 2.0 and by (F) Haploview program.<p><b>Copyright information:</b></p><p>Taken from "SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis"</p><p>http://www.biomedcentral.com/1471-2105/9/290</p><p>BMC Bioinformatics 2008;9():290-290.</p><p>Published online 23 Jun 2008</p><p>PMCID:PMC2453143.</p><p></p

SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis-0

Nberg Equilibrium test are shown in the table. Triggering tabs for Data Import, Haplotype Estimation, LD Blocking and Case-Control Study are shown on the left panel.<p><b>Copyright information:</b></p><p>Taken from "SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis"</p><p>http://www.biomedcentral.com/1471-2105/9/290</p><p>BMC Bioinformatics 2008;9():290-290.</p><p>Published online 23 Jun 2008</p><p>PMCID:PMC2453143.</p><p></p

SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis-3

<p><b>Copyright information:</b></p><p>Taken from "SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis"</p><p>http://www.biomedcentral.com/1471-2105/9/290</p><p>BMC Bioinformatics 2008;9():290-290.</p><p>Published online 23 Jun 2008</p><p>PMCID:PMC2453143.</p><p></p

SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis-5

Sis, (B) false discovery rate, (C) reconstructed haplotypes.<p><b>Copyright information:</b></p><p>Taken from "SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis"</p><p>http://www.biomedcentral.com/1471-2105/9/290</p><p>BMC Bioinformatics 2008;9():290-290.</p><p>Published online 23 Jun 2008</p><p>PMCID:PMC2453143.</p><p></p

SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis-4

Separately shown in the bar charts. P-values are log transformed and sorted by descending order. Odds ratios (OR) and 95% confidence interval of odds ratios are displayed simultaneously with p-value of the chi-square test in the upper table. Green horizontal line represents significance level.<p><b>Copyright information:</b></p><p>Taken from "SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis"</p><p>http://www.biomedcentral.com/1471-2105/9/290</p><p>BMC Bioinformatics 2008;9():290-290.</p><p>Published online 23 Jun 2008</p><p>PMCID:PMC2453143.</p><p></p

SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis-1

PL-EM algorithm. The upper panel shows the control options for PL-EM algorithm. Middle panel shows the observed alleles and allele frequencies. The histogram and tables in the bottom panel shows the most likely haplotypes and their frequencies in a given sample. Individual haplotypes and estimation accuracies are shown on the right part of the bottom panel.<p><b>Copyright information:</b></p><p>Taken from "SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis"</p><p>http://www.biomedcentral.com/1471-2105/9/290</p><p>BMC Bioinformatics 2008;9():290-290.</p><p>Published online 23 Jun 2008</p><p>PMCID:PMC2453143.</p><p></p

Q-Q plots of a randomly selected genes in (N) normal and (T) tumor groups

<p><b>Copyright information:</b></p><p>Taken from "Novel and simple transformation algorithm for combining microarray data sets"</p><p>http://www.biomedcentral.com/1471-2105/8/218</p><p>BMC Bioinformatics 2007;8():218-218.</p><p>Published online 25 Jun 2007</p><p>PMCID:PMC1914088.</p><p></p> (A: data set A; B: data set B; AB: combined data sets

Comparison of within-group correlations (AN, BN, AT, BT: normal and tumor groups in data set A and data set B, respectively)

<p><b>Copyright information:</b></p><p>Taken from "Novel and simple transformation algorithm for combining microarray data sets"</p><p>http://www.biomedcentral.com/1471-2105/8/218</p><p>BMC Bioinformatics 2007;8():218-218.</p><p>Published online 25 Jun 2007</p><p>PMCID:PMC1914088.</p><p></p> ** P-value < 0.01

Comparison of integration methods which are AB, A'B, AB' and A'B', using unsupervised hierarchical cluster analysis

<p><b>Copyright information:</b></p><p>Taken from "Novel and simple transformation algorithm for combining microarray data sets"</p><p>http://www.biomedcentral.com/1471-2105/8/218</p><p>BMC Bioinformatics 2007;8():218-218.</p><p>Published online 25 Jun 2007</p><p>PMCID:PMC1914088.</p><p></p> All of data sets include two experimental groups, normal and tumor. Euclidean distance and average linkage method were used as similarity measure and linkage method for hierarchical cluster analysis (pink: data set A; blue: data set B)