Functional Classification of Skeletal Muscle Networks. I. Normal Physiology

Extensive measurements of the parts list of human skeletal muscle through transcriptomics and other phenotypic assays offer the opportunity to reconstruct detailed functional models. Through integration of vast amounts of data present in databases and extant knowledge of muscle function combined with robust analyses that include a clustering approach, we present both a protein parts list and network models for skeletal muscle function. The model comprises the four key functional family networks that coexist within a functional space; namely, excitation-activation family (forward pathways that transmit a motoneuronal command signal into the spatial volume of the cell and then use Ca2+ fluxes to bind Ca2+ to troponin C sites on F-actin filaments, plus transmembrane pumps that maintain transmission capacity); mechanical transmission family (a sophisticated three-dimensional mechanical apparatus that bidirectionally couples the millions of actin-myosin nanomotors with external axial tensile forces at insertion sites); metabolic and bioenergetics family (pathways that supply energy for the skeletal muscle function under widely varying demands and provide for other cellular processes); and signaling-production family (which represents various sensing, signal transduction, and nuclear infrastructure that controls the turn over and structural integrity and regulates the maintenance, regeneration, and remodeling of the muscle). Within each family, we identify subfamilies that function as a unit through analysis of large-scale transcription profiles of muscle and other tissues. This comprehensive network model provides a framework for exploring functional mechanisms of the skeletal muscle in normal and pathophysiology, as well as for quantitative modeling

Enskog kinetic theory for monodisperse gas–solid flows

The Enskog kinetic theory is used as a starting point to model a suspension of solid particles in a viscous gas. Unlike previous efforts for similar suspensions, the gas-phase contribution to the instantaneous particle acceleration appearing in the Enskog equation is modelled using a Langevin equation, which can be applied to a wide parameter space (e.g. high Reynolds number). Attention here is limited to low Reynolds number flow, however, in order to assess the influence of the gas phase on the constitutive relations, which was assumed to be negligible in a previous analytical treatment. The Chapman–Enskog method is used to derive the constitutive relations needed for the conservation of mass, momentum and granular energy. The results indicate that the Langevin model for instantaneous gas–solid force matches the form of the previous analytical treatment, indicating the promise of this method for regions of the parameter space outside of those attainable by analytical methods (e.g. higher Reynolds number). The results also indicate that the effect of the gas phase on the constitutive relations for the solid-phase shear viscosity and Dufour coefficient is non-negligible, particularly in relatively dilute systems. Moreover, unlike their granular (no gas phase) counterparts, the shear viscosity in gas–solid systems is found to be zero in the dilute limit and the Dufour coefficient is found to be non-zero in the elastic limit

Acoustic radiation from lifting airfoils in compressible subsonic flow

The far field acoustic radiation from a lifting airfoil in a three-dimensional gust is studied. The acoustic pressure is calculated using the Kirchhoff method, instead of using the classical acoustic analogy approach due to Lighthill. The pressure on the Kirchhoff surface is calculated using an existing numerical solution of the unsteady flow field. The far field acoustic pressure is calculated in terms of these values using Kirchhoff's formula. The method is validated against existing semi-analytical results for a flat plate. The method is then used to study the problem of an airfoil in a harmonic three-dimensional gust, for a wide range of Mach numbers. The effect of variation of the airfoil thickness and angle of attack on the acoustic far field is studied. The changes in the mechanism of sound generation and propagation due to the presence of steady loading and nonuniform mean flow are also studied