A comparison of ocean model data and satellite observations of features affecting the growth of the North Equatorial Counter Current during the strong 1997-1998 El Nino

Descriptions of the ocean's role in the El Niño usually focus on equatorial Kelvin waves and the ability of such waves to change the mean thermocline depth and the sea surface temperature (SST) in the central and eastern Pacific. In contrast, starting from a study of the transport of water with temperatures greater than 28 ∘C, sufficient to trigger deep atmospheric convection, Webb (2018) found that, during the strong El Niños of 1983–1984 and 1997–1998, advection by the North Equatorial Counter Current (NECC) had a much greater impact on sea surface temperatures than processes occurring near the Equator. Webb's analysis, which supports the scheme proposed by Wyrtki (1973, 1974), made use of archived data from a high-resolution ocean model. Previously the model had been checked in a preliminary comparison against SST observations in the equatorial Pacific, but, given the contentious nature of the new analysis, the model's behaviour in key areas needs to be checked further against observations. In this paper this is done for the 1987–1988 El Niño, making use of satellite observations of SST and sea level. SST is used to check the movement of warm water near the Equator and at the latitudes of the NECC. Sea level is used to check the model results at the Equator and at 6∘ N in the North Equatorial Trough. Sea level differences between these latitudes affect the transport of the NECC, the increased transport at the start of each strong El Niño being associated with a drop in sea level at 6∘ N in the western Pacific. Later rises in sea level at the Equator increase the transport of the NECC in mid-ocean. The variability of sea level at 6∘ N is also used to compare the strength of tropical instability waves in the model and in the observations. The model showed that in a normal year these act to dilute the temperature in the core of the NECC. However their strength declined during the development of the strong El Niños, allowing the NECC to carry warm water much further than normal across the Pacific. The results of this paper should not be taken as providing proof of the hypotheses of Wyrtki (1973, 1974) or Webb (2018) but instead as a failure of a targeted study, using satellite observations, to disprove the hypotheses

Reduced ascending/descending pass bias in SMOS salinity data demonstrated by observing westward-propagating features in the South Indian Ocean

The European Space Agency (ESA) Soil Moisture and Ocean Salinity (SMOS) satellite has been providing data, including sea surface salinity (SSS) measurements, for more than five years. However, the operational ESA Level 2 SSS data are known to have significant spatially and temporally varying biases between measurements from ascending passes (SSSA) and measurements from descending passes (SSSD). This paper demonstrates how these biases are reduced through the use of SSS anomalies. Climatology products are constructed using SMOS Level 2 data to provide daily, one-degree by one-degree climatologies separately for ascending and descending passes using a moving window approach (in time and space). The daily, one-degree products can then be averaged to provide values of climatological SSS at different spatial and/or temporal resolutions. The averaged values of the SMOS climatology products are in good general agreement with data from the World Ocean Atlas 2013. However, there are significant differences at high latitudes, as well as in coastal and dynamic regions, as found by previous studies. Both the mean and standard deviation of the differences between data from ascending passes and data from descending passes for the anomalies are reduced compared with those obtained using the original salinity values. Geophysical signals are clearly visible in the anomaly products and an example is shown in the Southern Indian Ocean of westward-propagating signals that we conclude represent the surface expression of Rossby waves or large-scale non-linear eddies. The signals seen in salinity data agree (in speed) with those from sea surface temperature and sea surface height and are consistent with previous studies

Cross-calibrating ALES Envisat and CryoSat-2 Delay-Doppler: a coastal altimetry study in the Indonesian Seas

A regional cross-calibration between the first Delay-Doppler altimetry dataset from Cryosat-2 and a retracked Envisat dataset is here presented, in order to test the benefits of the Delay-Doppler processing and to expand the Envisat time series in the coastal ocean. The Indonesian Seas are chosen for the calibration, since the availability of altimetry data in this region is particularly beneficial due to the lack of in-situ measurements and its importance for global ocean circulation. The Envisat data in the region are retracked with the Adaptive Leading Edge Subwaveform (ALES) Retracker, which has been previously validated and applied successfully to coastal sea level research. The study demonstrates that CryoSat-2 is able to decrease the 1-Hz noise of sea level estimations by 0.3 cm within 50 km of the coast, when compared to the ALES-reprocessed Envisat dataset. It also shows that Envisat can be confidently used for detailed oceanographic research after the orbit change of October 2010. Cross-calibration at the crossover points indicates that in the region of study a sea state bias correction equal to 5% of the significant wave height is an acceptable approximation for Delay-Doppler altimetry. The analysis of the joint sea level time series reveals the geographic extent of the semiannual signal caused by Kelvin waves during the monsoon transitions, the larger amplitudes of the annual signal due to the Java Coastal Current and the impact of the strong La Niña event of 2010 on rising sea level trends

A new daily quarter degree sea level anomaly product from CryoSat-2 for ocean science and applications

The European Space Agency launched CryoSat-2 as the first European ice mission in 2010. Its advanced altimeter met primary objectives concerned with sea ice thickness and ice sheets. The value of Cryosat-2 data over global oceans was recognised, and operational products were developed via the CryoSat Ocean Processor (COP). The novel orbit of CryoSat-2 results in a denser coverage of sample points compared to other satellite altimeters. The National Oceanography Centre Sea Level Anomaly (NOCSLA) gridded product is based on interpolating Geophysical Ocean Products (GOP) using weights in space and time. GOP represents the highest quality operational ocean data. NOCSLA is a daily, ¼° sea level anomaly product covering non-coastal oceans between [60°N 60°S] and January 2011 to October 2020. The paper presents the methodology and scientific applications of NOCSLA. Oceanographic features observed are compared against products from other missions, including Rossby waves and El Niño signals. Results show good agreement with other products, confirming the value of Cryosat-2 data for ocean science and applications

CryoSat ocean product quality status and future evolution

The main objectives of this paper are to present the status of the CryoSat ocean products and to give an overview of all associated quality control and validation activities. Launched in 2010, the polar-orbiting European Space Agency’s (ESA) CryoSat mission was primarily developed to measure changes in the thickness of polar sea ice and elevation of the ice sheets. Going beyond its ice-monitoring objective, CryoSat is also a valuable source of data for the oceanographic community. The satellite’s radar altimeter can measure high-resolution geophysical parameters from the open ocean to the coast. To enable their full scientific and operational exploitation, the ocean products continuously evolve and need to be quality-controlled and thoroughly validated via science-oriented diagnostics based on multi-platform in situ data, models and other satellite missions. In support to ESA, the CryoSat ocean validation teams conduct this quality assessment for both the near real time and offline ocean products, both over short time scales (daily and monthly monitoring) and long-term stability (annual trends). Based on the outcomes from these quality analyses and feedback from scientific oceanographic community, ESA intends to upgrade the CryoSat Ocean processing chain for Autumn 2017

Depression care management for late-life depression in China primary care: Protocol for a randomized controlled trial

<p>Abstract</p> <p>Background</p> <p>As a major public health issue in China and worldwide, late-life depression is associated with physical limitations, greater functional impairment, increased utilization and cost of health care, and suicide. Like other chronic diseases in elders such as hypertension and diabetes, depression is a chronic disease that the new National Health Policy of China indicates should be managed in primary care settings. Collaborative care, linking primary and mental health specialty care, has been shown to be effective for the treatment of late-life depression in primary care settings in Western countries. The primary aim of this project is to implement a depression care management (DCM) intervention, and examine its effectiveness on the depressive symptoms of older patients in Chinese primary care settings.</p> <p>Methods/Design</p> <p>The trial is a multi-site, primary clinic based randomized controlled trial design in Hangzhou, China. Sixteen primary care clinics will be enrolled in and randomly assigned to deliver either DCM or care as usual (CAU) (8 clinics each) to 320 patients (aged ≥ 60 years) with major depression (20/clinic; n = 160 in each treatment condition). In the DCM arm, primary care physicians (PCPs) will prescribe 16 weeks of antidepressant medication according to the treatment guideline protocol. Care managers monitor the progress of treatment and side effects, educate patients/family, and facilitate communication between providers; psychiatrists will provide weekly group psychiatric consultation and CM supervision. Patients in both DCM and CAU arms will be assessed by clinical research coordinators at baseline, 4, 8, 12, 18, and 24 months. Depressive symptoms, functional status, treatment stigma and clients' satisfaction will be used to assess patients' outcomes; and clinic practices, attitudes/knowledge, and satisfaction will be providers' outcomes.</p> <p>Discussion</p> <p>This will be the first trial of the effectiveness of a collaborative care intervention aiming to the management of late-life depression in China primary care. If effective, its finding will have relevance to policy makers who wish to scale up DCM treatments for late-life depression in national wide primary care across China.</p> <p>Study Registration</p> <p>The DCM project is registered through the National Institutes of Health sponsored by clinical trials registry and has been assigned the identifier: <a href="http://www.clinicaltrials.gov/ct2/show/NCT01287494">NCT01287494</a></p

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals &lt;1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

Just-in-time altimetry: international collaboration in provision of altimetry datasets

Environmental research requires access to quality controlled, calibrated data. Satellite altimeter data are used in a range of environmental research, including oceanography, ice and land surface studies. Users who are not altimeter specialists may not be aware of, or have access to, the latest updates and most appropriate corrections to use for their application. We propose a GRID based methodology to give all users access to the best possible altimeter data product at the time of the request, tailor made for their specific application. A data portal system would be based on a "Network of Trust" consisting of the data providers and a certificating authority. Data could be served through a fully interactive web 'front-end' or directly from within analysis programmes. This system would build on the experiences gained in combining two existing Altimeter Data services (GAPSand RADS) to produce a coherent data service with alternative web interfaces and configurable users access

NERC Data Grid

The NERC Data Grid (NDG) provides the infrastructure which allows users to: - Find data - Explore what is known about datasets - Access, manipulate and visualise data! Like the web, the NDG has no “owner” or “central control”; data remain with data providers - be they managed data centres in the UK or abroad, or semi-managed data archives in large research groups. The location of the data can be transparent to the user, while still allowing data providers to maintain their intellectual investment by controlling access. The NDG team provide two community services which all NDG participants may avail themselves of: - The “NDG Discovery Service”: A database of discovery information, harvested from data providers around the world, together with a portal web-site and a set of web-services, for exploiting that database. - The “NDG Vocabulary Service”: Databases of environmental thesauri and ontology tools to map between terms