Public geospatial datasets as an approach to maximizing efficiency in the collection of site covariates in wildlife–vehicle collision studies

Wildlife–vehicle collisions (WVCs) are a major research focus because of increasing human health and safety concerns and the potential for biological impacts on wildlife. A key component of both understanding the causes of WVCs and designing mitigation measures is the collection and analysis of environmental and roadway data at WVC sites. However, collecting these site data can be logistically challenging and potentially dangerous to researchers. We studied the feasibility and accuracy of using public geospatial datasets, particularly Google Earth and Street View, as an alternative approach to assessing WVC onsite covariates. We randomly selected 50 sites from a larger WVC study and measured the topography, habitat type, width of the road median, and presence of fencing at each site as representatives of typical WVC site covariates. We compared the measurements recorded in the fi eld to estimates obtained from public geospatial datasets in the lab. We determined that median topography had the lowest overall accuracy (60%), followed by presence of fencing with accuracy at 75% of sites. By contrast, median habitat type was identified correctly in almost all comparisons (96% overall accuracy). The root mean squared error for median width was 1.15 m overall. Our results suggest that Google platforms may serve as viable alternatives to fi eld data collection for site covariates related to coarse measures of habitat type and some characteristics of road topography, thus reducing time requirements and potential safety risks to researchers in the fi eld. However, there are several crucial caveats to consider when using geospatial platforms, particularly as they relate to 3-dimensional depictions of roadway features. Thus, we urge caution when attempting to use digital platforms to collect data on these covariates

External Iliac Artery Stenting: High Incidence of Concomitant Revascularization Procedures

Objectives: To review immediate results, patency rates, hemodynamic success, and incidence of concomitant procedures with external iliac artery stenting (EIAS). Methods: Demographic features, category and clinical grade, Trans-Atlantic Inter-Society Consensus II classification lesion type, pre- and postprocedure ankle–brachial indices, and primary patency were compared between group 1 (EIAS without distal revascularization) and group 2 (EIAS with concomitant distal revascularization).Results: No mortality and a 100% immediate technical success rate was recorded in group 1 (n = 12) and group 2 (n = 24). Eleven patients (30.6%) also had stenting of the adjacent common iliac artery. Two thirds of group 2 patients required concomitant femoral or distal revascularization. Conclusions: No difference in stent patency rates was found between patients in group 1 versus group 2. Patients requiring EIAS tend to have more diffuse arterial disease necessitating complicated open reconstruction and/or distal revascularization, as well as more proximal iliac stenting

Religion, spirituality, and older adults with HIV: critical personal and social resources for an aging epidemic

By 2015, approximately half of adults with HIV in the United States will be 50 and older. The demographic changes in this population due to successful treatment represent a unique challenge, not only in assisting these individuals to cope with their illness, but also in helping them to age successfully with this disease. Religious involvement and spirituality have been observed to promote successful aging in the general population and help those with HIV cope with their disease, yet little is known about how these resources may affect aging with HIV. Also, inherent barriers such as HIV stigma and ageism may prevent people from benefitting from religious and spiritual sources of solace as they age with HIV. In this paper, we present a model of barriers to successful aging with HIV, along with a discussion of how spirituality and religiousness may help people overcome these barriers. From this synthesis, implications for practice and research to improve the quality of life of this aging population are provided

Species Composition and Temporal Patterns of Wildlife-Vehicle Collisions in Southwest Virginia, USA

Mitigating wildlife–vehicle collisions (WVCs) is becoming a major wildlife conservation focus, particularly in areas characterized by increased anthropogenic development. Concomitantly, wildlife managers and transportation planners need better information regarding spatiotemporal patterns of WVCs to develop measures that mitigate negative impacts on wildlife. To address this need, in 2015 we conducted a yearlong WVC study in the Appalachian Mountains of Virginia, USA to determine the species composition of WVCs across mammals, birds, and herpetofauna. In addition, we compared patterns of WVC road mortalities across 2 adjacent routes with different vehicle traffic volumes and evaluated the relationships between temporal variations in WVC frequency and seasonal activity of focal taxa. The mean weekly WVC mortality rate across all species (n = 65) was 13.8 ± 1.73 per 100 km. The WVC mortalities were not evenly distributed across routes, with overall differences driven primarily by the relative abundance of meso-mammals. Temporal WVC rates differed for woodchucks (Marmota monax), eastern box turtles (Terrapene carolina carolina), and eastern ratsnakes (Pantherophis alleghaniensis), with contrasting peaks in frequency for passerine birds and birds of prey. Because of the substantial differences we observed in WVC mortality rates relative to traffic volumes and seasonal activity patterns of the taxa studied, any WVC mitigation strategies implemented will need to be site-specific

EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries

<p>Abstract</p> <p>Background</p> <p>Several biological techniques result in the acquisition of functional sets of cDNAs that must be sequenced and analyzed. The emergence of redundant databases such as UniGene and centralized annotation engines such as Entrez Gene has allowed the development of software that can analyze a great number of sequences in a matter of seconds.</p> <p>Results</p> <p>We have developed "EST Express", a suite of analytical tools that identify and annotate ESTs originating from specific mRNA populations. The software consists of a user-friendly GUI powered by PHP and MySQL that allows for online collaboration between researchers and continuity with UniGene, Entrez Gene and RefSeq. Two key features of the software include a novel, simplified Entrez Gene parser and tools to manage cDNA library sequencing projects. We have tested the software on a large data set (2,016 samples) produced by subtractive hybridization.</p> <p>Conclusion</p> <p>EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries, such as those generated through subtractive hybridization or yeast two-hybrid screens. It then provides several layers of annotation based on Entrez Gene and RefSeq to allow the user to highlight useful genes and manage cDNA library projects.</p

Clinical and genetic heterogeneity in familial focal segmental glomerulosclerosis

Clinical and genetic heterogeneity in familial focal segmental glomerulosclerosis.BackgroundFamilial forms of focal segmental glomerulosclerosis (FFSGS) that exhibit autosomal dominant or recessive patterns of inheritance have been described. The genetic basis of these hereditary forms of FSGS is unknown. One recent study of a kindred from Oklahoma with an autosomal dominant form of FSGS linked this disease to a region of chromosome 19q. In addition, polymorphisms in a gene in this region on chromosome 19q13 have been linked to congenital nephrotic syndrome of the Finnish type. We have ascertained and characterized a large family with autosomal dominant FFSGS (Duke 6530).MethodsFamilies were compared for clinical and genetic heterogeneity. To test for linkage of our family to this portion of chromosome 19, genomic DNA was isolated from 102 family members, and polymerase chain reaction was performed using eight microsatellite markers that spanned the area of interest on chromosome 19. Data were evaluated using two-point linkage analysis, multipoint analysis, and an admixture test.ResultsLinkage was excluded at a distance of ±5 to 10cm for all markers tested with two-point log10 of the odds of linkage (LOD) scores and from an approximate 60cm interval in this area of chromosome 19q via multipoint analysis.ConclusionFSGS has been called the “final common pathway” of glomerular injury, as it is a frequent pathological manifestation with diverse etiologies. This diversity likely correlates with the genetic heterogeneity that we have established. Thus, our data demonstrate that there are at least two genes responsible for this disease, and there is genetic as well as clinical heterogeneity in autosomal dominant FSGS

Overexpression of human wild-type FUS causes progressive motor neuron degeneration in an age- and dose-dependent fashion

Amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD) are relentlessly progressive neurodegenerative disorders with overlapping clinical, genetic and pathological features. Cytoplasmic inclusions of fused in sarcoma (FUS) are the hallmark of several forms of FTLD and ALS patients with mutations in the FUS gene. FUS is a multifunctional, predominantly nuclear, DNA and RNA binding protein. Here, we report that transgenic mice overexpressing wild-type human FUS develop an aggressive phenotype with an early onset tremor followed by progressive hind limb paralysis and death by 12 weeks in homozygous animals. Large motor neurons were lost from the spinal cord accompanied by neurophysiological evidence of denervation and focal muscle atrophy. Surviving motor neurons in the spinal cord had greatly increased cytoplasmic expression of FUS, with globular and skein-like FUS-positive and ubiquitin-negative inclusions associated with astroglial and microglial reactivity. Cytoplasmic FUS inclusions were also detected in the brain of transgenic mice without apparent neuronal loss and little astroglial or microglial activation. Hemizygous FUS overexpressing mice showed no evidence of a motor phenotype or pathology. These findings recapitulate several pathological features seen in human ALS and FTLD patients, and suggest that overexpression of wild-type FUS in vulnerable neurons may be one of the root causes of disease. Furthermore, these mice will provide a new model to study disease mechanism, and test therapies

CCNF mutations in amyotrophic lateral sclerosis and frontotemporal dementia

Amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) are overlapping, fatal neurodegenerative disorders in which the molecular and pathogenic basis remains poorly understood. Ubiquitinated protein aggregates, of which TDP-43 is a major component, are a characteristic pathological feature of most ALS and FTD patients. Here we use genome-wide linkage analysis in a large ALS/FTD kindred to identify a novel disease locus on chromosome 16p13.3. Whole-exome sequencing identified a CCNF missense mutation at this locus. Interrogation of international cohorts identified additional novel CCNF variants in familial and sporadic ALS and FTD. Enrichment of rare protein-altering CCNF variants was evident in a large sporadic ALS replication cohort. CCNF encodes cyclin F, a component of an E3 ubiquitin-protein ligase complex (SCFCyclin F). Expression of mutant CCNF in neuronal cells caused abnormal ubiquitination and accumulation of ubiquitinated proteins, including TDP-43 and a SCFCyclin F substrate. This implicates common mechanisms, linked to protein homeostasis, underlying neuronal degeneration