Review of Schismatogobius (Gobiidae) from Japan, with the description of a new species

Three species of Schismatogobius de Beaufort 1912, distinguished by their morphology and mitochondrial DNA sequences, were found in freshwater streams in the Ryukyu Archipelago, Japan. Although two species were previously known from Japan (S. roxasi Herre 1936 and S. ampluvinculus Chen, Shao, and Fang 1995), the taxonomy needs to be revised. To identify these species, the holotype morphology of S. marmoratus (Peters 1868), S. bruynisi de Beaufort 1912, and S. roxasi, originally described from the Philippines and Indonesia, were examined and re-described here, because relatively little information about their diagnostic characters was provided in the original descriptions. The three Japanese species were identified as S. ampluvinculus, S. marmoratus, and a new species. They were distinguished from each other and from their congeners by the banding pattern of the body, markings on the pectoral fins, pigment patterns on the ventral surface of the head and pelvic fin, body depth at the pelvic-fin origin, pre-anal length, and pectoral-fin ray counts. Although the new species had been regarded as S. roxasi in previous publications, we show that it is actually not S. roxasi and that it also differs from all other nominal species of Schismatogobius. This is described as a new species, S. ninja. Additionally, this is the first record of S. marmoratus from Japan

Reactions of excited-state benzophenone ketyl radical in a room-temperature ionic liquid

金沢大学理工研究域自然システム学系The photochemistry of the benzophenone ketyl radical in D1 excited state, BPH(D1), was studied by means of two-color dual-pulse laser flash photolysis (355 and 532 nm) in a room-temperature ionic liquid, 1-butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)amide (Bmim-TFSA), and in methanol. Upon excitation with the 532 nm pulse, BPH(D1) emitted strong fluorescence. The transient absorption and fluorescence spectra of BPH(D1) were measured with nanosecond and sub-nanosecond time resolution, respectively. The observed Stokes shift was 1700 cm-1 in Bmim-TFSA, and this shift was close to that in acetonitrile. The fluorescence lifetime of BPH(D1) was determined to be 5 ns in Bmim-TFSA, and again the value was close to that in acetonitrile. The rate constant of the reaction of BPH(D1) with CCl4 in Bmim-TFSA was determined to be (2.1 ± 0.4) × 109 M-1 s-1, which was 10 times the rate constant calculated on the basis of the bulk viscosity of Bmim-TFSA. The results are discussed in terms of the effective microscopic viscosity of the ionic liquid that was recently reported for the cage effect. © 2010 the Owner Societies

Formation kinetics of levoglucosan from glucose in high temperature water

金沢大学理工研究域自然システム学系The application of high temperature water to produce levoglucosan from glucose was studied. The reactions were performed using a tube reactor, and the kinetics for the decomposition of glucose and levoglucosan in high temperature water was examined. The temperature dependence of the reaction rate of the glucose decomposition was of the Arrhenius type. In contrast, the reaction rates for the decomposition of levoglucosan decreased with the increasing temperature at the constant pressure of 25 MPa. The yields of levoglucosan were examined in the temperature range from 200 to 410 °C and the pressure from 5 to 25 MPa. It was found that the yields of levoglucosan increased with the decreasing pressure. © 2009 Elsevier B.V. All rights reserved

Development of a novel data mining tool to find cis-elements in rice gene promoter regions

<p>Abstract</p> <p>Background</p> <p>Information on more than 35 000 full-length <it>Oryza sativa </it>cDNAs, together with associated microarray gene expression data collected under various treatment conditions, has made it feasible to identify motifs that are conserved in gene promoters and may act as <it>cis</it>-regulatory elements with key roles under the various conditions.</p> <p>Results</p> <p>We have developed a novel tool that searches for <it>cis</it>-element candidates in the upstream, downstream, or coding regions of differentially regulated genes. The tool first lists <it>cis-</it>element candidates by motif searching based on the supposition that if there are <it>cis-</it>elements playing important roles in the regulation of a given set of genes, they will be statistically overrepresented and will be conserved. Then it evaluates the likelihood scores of the listed candidate motifs by association rule analysis. This strategy depends on the idea that motifs overrepresented in the promoter region could play specific roles in the regulation of expression of these genes. The tool is designed so that any biological researchers can use it easily at the publicly accessible Internet site <url>http://hpc.irri.cgiar.org/tool/nias/ces</url>. We evaluated the accuracy and utility of the tool by using a dataset of auxin-inducible genes that have well-studied <it>cis-</it>elements. The test showed the effectiveness of the tool in identifying significant relationships between <it>cis-</it>element candidates and related sets of genes.</p> <p>Conclusion</p> <p>The tool lists possible <it>cis-</it>element motifs corresponding to genes of interest, and it will contribute to the deeper understanding of gene regulatory mechanisms in plants.</p

Immunologic Monitoring of Cellular Responses by Dendritic/Tumor Cell Fusion Vaccines

Although dendritic cell (DC)- based cancer vaccines induce effective antitumor activities in murine models, only limited therapeutic results have been obtained in clinical trials. As cancer vaccines induce antitumor activities by eliciting or modifying immune responses in patients with cancer, the Response Evaluation Criteria in Solid Tumors (RECIST) and WHO criteria, designed to detect early effects of cytotoxic chemotherapy in solid tumors, may not provide a complete assessment of cancer vaccines. The problem may, in part, be resolved by carrying out immunologic cellular monitoring, which is one prerequisite for rational development of cancer vaccines. In this review, we will discuss immunologic monitoring of cellular responses for the evaluation of cancer vaccines including fusions of DC and whole tumor cell

Size-selective encapsulation property of unimolecular reverse micelle consisting of hyperbranched D-glucan core and L-leucine ethyl ether shell

金沢大学理工研究域自然システム学系The synthesis of a unimolecular reverse micelle (3) consisting of hyper-branched D-glucan as the core and L-leucine ethyl ester as the shell was accomplished through the carbamation reaction of the hyperbranched D-glucan (1) with the N-carbonyl L-leucine ethyl ester (2) in pyridine at 100 °C. The polymer 3 was soluble in a large variety of organic solvents, such as methanol, acetone, chloroform, and ethyl acetate, and insoluble in water, which remarkably differed from the solubility of 1. The solubilities of 3 were also changed by the substitution degrees of the L-leucine moiety. The encapsulation ability of 3 toward water-soluble dyes has been investigated. These results indicated that 3 was a unimolecular reverse micelle with an encapsulation ability toward hydrophilic dye molecules. In addition, 3 showed an molecular size-selective encapsulation ability. Copyright © 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

Current Immunotherapeutic Approaches in Pancreatic Cancer

Pancreatic cancer is a highly aggressive and notoriously difficult to treat. As the vast majority of patients are diagnosed at advanced stage of the disease, only a small population is curative by surgical resection. Although gemcitabine-based chemotherapy is typically offered as standard of care, most patients do not survive longer than 6 months. Thus, new therapeutic approaches are needed. Pancreatic cancer cells that develop gemcitabine resistance would still be suitable targets for immunotherapy. Therefore, one promising treatment approach may be immunotherapy that is designed to target pancreatic-cancer-associated antigens. In this paper, we detail recent work in immunotherapy and the advances in concept of combination therapy of immunotherapy and chemotherapy. We offer our perspective on how to increase the clinical efficacy of immunotherapies for pancreatic cancer

Shared and Distinct Functions of the Transcription Factors IRF4 and IRF8 in Myeloid Cell Development

Interferon regulatory factor (IRF) 8 and IRF4 are structurally-related, hematopoietic cell-specific transcription factors that cooperatively regulate the differentiation of dendritic cells and B cells. Whilst in myeloid cells IRF8 is known to modulate growth and differentiation, the role of IRF4 is poorly understood. In this study, we show that IRF4 has activities similar to IRF8 in regulating myeloid cell development. The ectopic expression of IRF4 in myeloid progenitor cells in vitro inhibits cell growth, promotes macrophages, but hinders granulocytic cell differentiation. We also show that IRF4 binds to and activates transcription through the IRF-Ets composite sequence (IECS). Furthermore, we demonstrate that Irf8-/-Irf4-/- mice exhibit a more severe chronic myeloid leukemia (CML)-like disease than Irf8-/- mice, involving a disproportionate expansion of granulocytes at the expense of monocytes/macrophages. Irf4-/- mice, however, display no obvious abnormality in myeloid cell development, presumably because IRF4 is expressed at a much lower level than IRF8 in granulocyte-macrophage progenitors. Our results also suggest that IRF8 and IRF4 have not only common but also specific activities in myeloid cells. Since the expression of both the IRF8 and IRF4 genes is downregulated in CML patients, these results may add to our understanding of CML pathogenesis

Comparative molecular biological analysis of membrane transport genes in organisms

Comparative analyses of membrane transport genes revealed many differences in the features of transport homeostasis in eight diverse organisms, ranging from bacteria to animals and plants. In bacteria, membrane-transport systems depend mainly on single genes encoding proteins involved in an ATP-dependent pump and secondary transport proteins that use H+ as a co-transport molecule. Animals are especially divergent in their channel genes, and plants have larger numbers of P-type ATPase and secondary active transporters than do other organisms. The secondary transporter genes have diverged evolutionarily in both animals and plants for different co-transporter molecules. Animals use Na+ ions for the formation of concentration gradients across plasma membranes, dependent on secondary active transporters and on membrane voltages that in turn are dependent on ion transport regulation systems. Plants use H+ ions pooled in vacuoles and the apoplast to transport various substances; these proton gradients are also dependent on secondary active transporters. We also compared the numbers of membrane transporter genes in Arabidopsis and rice. Although many transporter genes are similar in these plants, Arabidopsis has a more diverse array of genes for multi-efflux transport and for response to stress signals, and rice has more secondary transporter genes for carbohydrate and nutrient transport

Unc-51/ATG1 Controls Axonal and Dendritic Development via Kinesin-Mediated Vesicle Transport in the Drosophila Brain

Background:Members of the evolutionary conserved Ser/Thr kinase Unc-51 family are key regulatory proteins that control neural development in both vertebrates and invertebrates. Previous studies have suggested diverse functions for the Unc-51 protein, including axonal elongation, growth cone guidance, and synaptic vesicle transport.Methodology/Principal Findings:In this work, we have investigated the functional significance of Unc-51-mediated vesicle transport in the development of complex brain structures in Drosophila. We show that Unc-51 preferentially accumulates in newly elongating axons of the mushroom body, a center of olfactory learning in flies. Mutations in unc-51 cause disintegration of the core of the developing mushroom body, with mislocalization of Fasciclin II (Fas II), an IgG-family cell adhesion molecule important for axonal guidance and fasciculation. In unc-51 mutants, Fas II accumulates in the cell bodies, calyx, and the proximal peduncle. Furthermore, we show that mutations in unc-51 cause aberrant overshooting of dendrites in the mushroom body and the antennal lobe. Loss of unc-51 function leads to marked accumulation of Rab5 and Golgi components, whereas the localization of dendrite-specific proteins, such as Down syndrome cell adhesion molecule (DSCAM) and No distributive disjunction (Nod), remains unaltered. Genetic analyses of kinesin light chain (Klc) and unc-51 double heterozygotes suggest the importance of kinesin-mediated membrane transport for axonal and dendritic development. Moreover, our data demonstrate that loss of Klc activity causes similar axonal and dendritic defects in mushroom body neurons, recapitulating the salient feature of the developmental abnormalities caused by unc-51 mutations.Conclusions/Significance:Unc-51 plays pivotal roles in the axonal and dendritic development of the Drosophila brain. Unc-51-mediated membrane vesicle transport is important in targeted localization of guidance molecules and organelles that regulate elongation and compartmentalization of developing neurons