Population structure and variance effective size of red snapper (Lutjanus campechanus) in the northern Gulf of Mexico*

We assayed allelic variation at 19 nuclear-encoded microsatellites among 1622 Gulf red snapper (Lutjanus campechanus) sampled from the 1995 and 1997 cohorts at each of three offshore localities in the northern Gulf of Mexico (Gulf). Localities represented western, central, and eastern subregions within the northern Gulf. Number of alleles per microsatellite per sample ranged from four to 23, and gene diversity ranged from 0.170 to 0.917. Tests of conformity to Hardy-Weinberg equilibrium expectations and of genotypic equilibrium between pairs of micro-satellites were generally nonsignificant following Bonferroni correction. Significant genic or genotypic heterogeneity (or both) among samples was detected at four microsatellites and over all microsatellites. Levels of divergence among samples were low (FST ≤0.001). Pairwise exact tests revealed that six of seven “significant” comparisons involved temporal rather than spatial heterogeneity. Contemporaneous or variance effective size (NeV) was estimated from the temporal variance in allele frequencies by using a maximum-likelihood method. Estimates of NeV ranged between 1098 and >75,000 and differed significantly among localities; the NeV estimate for the sample from the northcentral Gulf was >60 times as large as the estimates for the other two localities. The differences in variance effective size could ref lect differences in number of individuals successfully reproducing, differences in patterns and intensity of immigration, or both, and are consistent with the hypothesis, supported by life-history data, that different “demographic stocks” of red snapper are found in the northern Gulf. Estimates of NeV for red snapper in the northern Gulf were at least three orders of magnitude lower than current estimates of census size (N). The ratio of effective to census size (Ne/N) is far below that expected in an ideal population and may reflect high variance in individual reproductive success, high temporal and spatial variance in productivity among subregions or a combination of the two

Egg Quality Traits and Predictors of Embryo and Fry Viability in Red Snapper \u3ci\u3eLutjanus campechanus\u3c/i\u3e

The quality of red snapper eggs is highly variable and unpredictable in aquaculture, leading to high mortality during early larval rearing. In this work, the viability of red snapper eggs was monitored from fertilization until unfed larvae expired because of exhaustion of vitelline reserves to determine egg quality traits in this species. The spawns were obtained via strip spawning wild-caught females following hormonal induction with chorionic gonadotropin. Females were induced immediately after capture (wild group, n = 17) or held captive for the entire maturation period prior to induction (captive group, n = 7). Candidate predictors of egg quality measured on the female parent at the time of induction or on the spawn at ovulation were evaluated using correlation and multiple regression analysis. The fertilization rate, the hatching rate, and the duration of survival of unfed larvae post hatch were weakly correlated to each other (-0.23 \u3c r \u3c −0.08), revealing occurrence of distinct and independent components of egg quality. Spawns from captive females were characterized by a longer latency interval between hormonal induction and ovulation, lower fecundity, and lower hatching rates, as compared to those from wild females. Among the wild brood fish, a positive correlation was observed between the age of the female and the hatching rate. The best model optimized during stepwise multiple regression analysis of hatching rate data only explained 34% of the variance for this trait and no model could be optimized for the prediction of fertilization rate or the duration of survival post hatch. These results highlight the need to develop alternative egg quality measures to predict the viability of fry with confidence

Effects of Hypoxia and Elevated Ammonia Concentration on the Viability of Red Snapper Embryos and Early Larvae

The effects of hypoxic conditions and elevated ammonia concentrations on the viability of embryos and newly hatched larvae of the red snapper (Lutjanus campechanus) were investigated. In all experiments, tested levels of hypoxia or ammonia concentrationswere applied to embryos and unfed newly hatched larvae from three different spawns. Exposures began at 1 h post fertilization (pf) and lasted until all individuals in a group had expired. Survival rates were monitored daily in duplicates for each spawn in each treatment. Fertilized eggs exposed to 2 mg L-1 dissolved oxygen (29% saturation) showed complete mortality before hatch while 81% of embryos in control groups (\u3e85% saturation) hatched and subsequently maintained high survival until 5 days pf. Exposure to a moderate hypoxia (target 3 mg L-1, 43% saturation) reduced significantly the hatch rate and subsequent survival rates; the magnitude of the difference in survival rate between control and exposed groups increased from 10% at hatch to 45% at 5 days pf. When oxygen concentration was maintained high (83% saturation) until 36 h pf and then progressively reduced to reach 3 mg L-1 at 2 days pf, the survival of exposed embryos and larvae did not differ significantly from those recorded in control groups, although potential delayed or cumulative effects of the treatment after 4 days pf could not be evaluated in this experiment. Embryos exposed to 10 mg L-1 total ammonia (TA-N), which corresponded to unionized ammonia (UIA-N) concentrations ranging between 0.307 and 0.468 mg L-1 in the conditions of the experiment, exhibited significantly reduced hatch rates and complete mortality between 3 and 4 days pf; the latter period corresponds to the onset of exogenous feeding of red snapper. In contrast, control groups (TA-N \u3c 0.26 mg L-1, UIA-N \u3c 0.006 mg L-1) maintained high survival rates beyond 5 days pf indicating potential to successfully initiate exogenous feeding. Exposure to 1 mg L-1 TA-N (0.020 mg L-1 \u3c UIA-N \u3c 0.054 mg L-1) did not alter significantly survival with respect to control groups. Significant interactions between the spawn and the tolerance to hypoxia or elevated ammonia were detected in both experiments, indicating that variations among spawns need to be accounted for when determining safe levels for hatchery production. Statement of relevance Achieving a reliable supply of high quality eggs and larvae is one of the main challenges of the developing marine aquaculture industry. Most studies to date have focused on maternal determinants of egg quality but the viability of embryos and newly hatched larvae can be impacted after fertilization if environmental conditions become unfavorable due to intensive hatchery conditions; this topic is poorly documented in marine fishes to date. This study provides data on the effects of two major stressors acting under high density culture (hypoxia and elevated ammonia concentration) on embryos and newly hatched larvae of the red snapper; the results highlight the importance to consider variations among spawns/parents when determining safe levels for hatchery production and also the high sensitivity of red snapper to these stresses, suggesting that this topic should be investigated in other marine offshore species. Relevance of the research to commercial aquaculture. The research contributes to control egg quality. (C) 2016 Elsevier B.V. All rights reserved

Population structure, long-term connectivity, and effective size of mutton snapper (Lutjanus analis) in the Caribbean Sea and Florida Keys

Genetic structure and average long-term connectivity and effective size of mutton snapper (Lutjanus analis) sampled from offshore localities in the U.S. Caribbean and the Florida Keys were assessed by using nuclear-encoded microsatellites and a fragment of mitochondrial DNA. No significant differences in allele, genotype (microsatellites), or haplotype (mtDNA) distributions were detected; tests of selective neutrality (mtDNA) were nonsignificant after Bonferroni correction. Heuristic estimates of average long-term rate of migration (proportion of migrant individuals/generation) between geographically adjacent localities varied from 0.0033 to 0.0054, indicating that local subpopulations could respond independently of environmental perturbations. Estimates of average longterm effective population sizes varied from 341 to 1066 and differed significantly among several of the localities. These results indicate that over time larval drift and interregional adult movement may not be sufficient to maintain population sustainability across the region and that there may be different demographic stocks at some of the localities studied. The estimate of long-term effective population size at the locality offshore of St. Croix was below the minimum threshold size considered necessary to maintain the equilibrium between the loss of adaptive genetic variance from genetic drift and its replacement by mutation. Genetic variability in mutton snapper likely is maintained at the intraregional level by aggregate spawning and random mating of local populations. This feature is perhaps ironic in that aggregate spawning also renders mutton snapper especially vulnerable to overexploitation

Antibiotic Resistance in a Coastal River in Mississippi, USA – Potential Drivers

Wastewater treatment plants (WWTPs) are major sources of antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs) in water bodies. Most studies on the impact of WWTPs on antibiotic resistance have focused on freshwater systems, with little information on coastal and estuarine waters with variable salinity. This study monitored seasonal levels of ARGs at the effluent and downstream of the Pascagoula— Moss Point WWTP in the lower Pascagoula River, a coastal river in southeastern Mississippi, USA. Surface water samples were collected seasonally at upstream, outflow, and 3 downstream sites from February to November 2016. Bacterial resistance to sulfamethazine, tetracycline, and ciprofloxacin was quantified using selective culture and qPCR. Mixed—effects models were developed to identify potential driving factors of ARG concentrations related to the WWTP and local environmental conditions (salinity, water temperature, and pH). The best model was selected based on the lowest Akaike Information Criterion (AIC) corrected for small sample size. The results show that the genes sul1, sul2, and intI1 were detected, with intI1 having the highest relative concentration. The qPCR analysis suggests a negative relation between ARG levels and temperature and salinity. ARG concentrations peaked immediately downstream of the WWTP and decreased gradually further downstream in some months, but the spatial pattern varied widely between sampling months. The study highlights the complex patterns of environmental ARGs and the importance of accounting for the impact of WWTPs, local environmental factors, and other anthropogenic influences to understand their potential drivers

The Status of Spotted Seatrout (\u3ci\u3eCynoscion nebulosus\u3c/i\u3e) As a Technologically Feasible Species for U.S. Marine Aquaculture

Culture models and facilities for large-scale, commercial production of popular Gulf of Mexico species are unavailable. The spotted seatrout (Cynoscion nebulosus) is one of the most popular recreational fishes in the Gulf of Mexico. Seatrout culture techniques were adapted from red drum (Sciaenops ocellatus) protocols developed in the 1970s. Broodstock husbandry, spawning, and extensive pond rearing techniques using fertilized and bloomed brackish ponds were well-established by the 1980s. By 2018, approximately 80 million 25–30-day old seatrout had been produced, mainly for stock enhancement. Cannibalism and poor nutrition hindered intensive tank culture. Between 2005 and 2015, an intensive tank-rearing protocol that reduced cannibalism and intracohort variability and increased average survival to almost 50% was developed using algal concentrate, rotifers, brine shrimp (Artemia sp.), and microencapsulated feeds. Preliminary results suggested that a 500 g fish could be produced in approximately 10 months. Nevertheless, interest in commercialization has remained low. Zootechnical performance throughout the latter stages of culture, the economics of production, consumer preferences/perceptions, and market capacity must be documented to complete the assessment of the spotted seatrout as a species for commercial aquaculture. The optimization of aquafeeds specific for seatrout and a domestication program is warranted to further facilitate industry growth

Sperm Repository For a Breeding Program of the Eastern Oyster \u3ci\u3eCrassostrea virginica\u3c/i\u3e: Sample Collection, Processing, Cryopreservation, and Data Management Plan

The Eastern oyster Crassostrea virginica (Family Ostreidae) is one of the most important fishery and aquaculture species in the U.S. and is a keystone species for coastal reefs. A breeding program was initiated in 2019 to support the fast-growing aquaculture industry culturing this species in the Gulf of Mexico. Oysters from 17 wild populations in embayment along the U.S. Gulf of Mexico coast from southwest Florida to the Matagorda Bay, Texas were used as broodstock for the program to maximize genetic diversity in the base population. A sperm repository of the broodstock was established to support the breeding project. The goal of this study was to demonstrate the sperm sample collection, processing, cryopreservation, and the data management plan involved in the establishment of a sperm germplasm repository of base populations. The supporting objectives were to: (1) develop a data management plan for the sperm repository; (2) streamline the procedure for sample collection, processing, and cryopreservation; (3) incorporate sperm quality analysis into the procedure, and (4) archive the cryopreserved samples as a repository for future use in the breeding program. This sperm repository included a total of 102 male oysters from the 17 collection sites (six oysters per site). A data management plan was developed with six categories, including sample collection, phenotype, fresh sperm, genotype, cryopreservation, and post-thaw sperm, as guide for data collection. Sperm collection was accomplished by strip spawn, and fresh sperm production, motility, and fertility were recorded for quality analysis. Cryopreserved sperm samples were sorted, labelled, archived, and stored in liquid nitrogen for future use. Post-thaw motility (1–30%) and plasm membrane integrity (15.34–70.36%) were recorded as post-thaw quality parameters. Overall, this study demonstrated a streamlined procedure of oyster sperm collection, processing, and cryopreservation for establishing a sperm repository that can serve as a template for construction of oyster germplasm repositories for breeding programs

Population Structure, Long-Term Connectivity, and Effective Size of Mutton Snapper (\u3ci\u3eLutjanus analis\u3c/i\u3e) In the Caribbean Sea and Florida Keys

Genetic structure and average long-term connectivity and effective size of mutton snapper (Lutjanus analis) sampled from offshore localities in the U.S. Caribbean and the Florida Keys were assessed by using nuclear-encoded microsatellites and a fragment of mitochondrial DNA. No significant differences in allele, genotype (microsatellites), or haplotype (mtDNA) distributions were detected; tests of selective neutrality (mtDNA) were nonsignificant after Bonferroni correction. Heuristic estimates of average long-term rate of migration (proportion of migrant individuals/generation) between geographically adjacent localities varied from 0.0033 to 0.0054, indicating that local subpopulations could respond independently of environmental perturbations. Estimates of average long-term effective population sizes varied from 341 to 1066 and differed significantly among several of the localities. These results indicate that over time larval drift and interregional adult movement may not be sufficient to maintain population sustainability across the region and that there may be different demographic stocks at some of the localities studied. The estimate of long-term effective population size at the locality offshore of St. Croix was below the minimum threshold size considered necessary to maintain the equilibrium between the loss of adaptive genetic variance from genetic drift and its replacement by mutation. Genetic variability in mutton snapper likely is maintained at the intraregional level by aggregate spawning and random mating of local populations. This feature is perhaps ironic in that aggregate spawning also renders mutton snapper especially vulnerable to overexploitation

First Data On Aquaculture of the Tripletail, \u3ci\u3eLobotes surinamensis\u3c/i\u3e, a Promising Candidate Species For U.S. Marine Aquaculture

The Tripletail, Lobotes surinamensis, is a warm-water pelagic fish that is increasingly targeted by U.S. anglers. The superior quality of Tripletail flesh coupled with the lack of domestic commercial fisheries stimulated interests to develop aquaculture of this species. In this work, photo-thermal conditioning of captive-held broodstocks promoted maturation in females, but spontaneous spawning was not observed. GnRHa slow-release implants induced ovulation in late vitellogenic females but fertility remained below 10% when GnRHa was administered alone. However, spawns with high fertility (up to 85%) were obtained when a dopamine antagonist was administered in conjunction with GnRHa implants indicating dopamine inhibition impaired final gamete maturation, in particular sperm production in males, in aquaculture conditions. Tripletail larvae successfully initiated exogenous feeding on enriched rotifers followed by Artemia nauplii and were weaned to prepared feeds at 25 days post hatch, yet with low survival through the late phases of larval culture. Pilot grow-out trials at low density in recirculating systems revealed impressive growth rates averaging over 170 g/month through a market size above 1 kg. While protocols for hatchery culture and grow-out still need to be optimized, current data suggest that Tripletail could become a successful species for U.S. marine aquaculture