Ichthyomyine rodents

p. 260-493 : ill., maps ; 26 cm.Includes bibliographical references (p. 482-493)

New Thomasomys

47 p. : ill. (1 col.), map ; 26 cm.Includes bibliographical references (p. 41-45).A new species of the murid rodent genus Thomasomys is described from the Cordillera Oriental of eastern Ecuador, a major range of the northern Andes that remains almost completely unexplored mammalogically. In order to provide a baseline for future faunal inventory work in these mountains, this report summarizes specimen data from the vicinity of Papallacta (0°22'S, 78°08'W), a small village located near tree line on the eastern (Amazonian) slope. In addition to the new Thomasomys, the local fauna includes 32 other species of nonvolant mammals, of which several (Akodon latebricola, Thomasomys cinnameus, and T. erro) have not been reported since their original descriptions in the 1920s. Taxonomic research based on this material indicates that at least six taxa currently treated as synonyms or subspecies should be recognized as valid species, including Thomasomys popayanus (possibly including T. nicefori) and T. praetor (both formerly synonymized with T. aureus), T. cinnameus and T. hudsoni (both formerly synonymized with T. gracilis), T. erro (formerly synonymized with T. cinereiventer), and Coendou quichua (formerly synonymized with C. bicolor). Although the Papallacta fauna includes several clades ('genera') that extend to south- and north-temperate latitudes, over half of the local species are endemic to the northern Andes (north of the Huancabamba Deflection in northern Peru); among these northern-Andean endemics, three species known only from northeastern Ecuador provide evidence for a distinct center of endemism in the Cordillera Oriental. Quantitative estimates of species-level faunal complementarity indicate substantial horizontal turnover (between ecologically similar highland sites) on the scale of a few hundred kilometers, and almost complete vertical turnover (between adjacent highland and lowland sites) on the scale of about 2000 m. Both phenomena pose significant challenges for timely inventory work across vast Andean landscapes that remain sparsely sampled by mammalogists. In particular, the middle elevations of the eastern slope of the northern Andes, a densely forested region approximately 2 km high and over 1500 km long, remain a mammalogical terra incognita

Genomics of a metamorphic timing QTL: \u3ci\u3emet1\u3c/i\u3e maps to a unique genomic position and regulates morph and species-specific patterns of brain transcription

Very little is known about genetic factors that regulate life history transitions during ontogeny. Closely related tiger salamanders (Ambystoma species complex) show extreme variation in metamorphic timing, with some species foregoing metamorphosis altogether, an adaptive trait called paedomorphosis. Previous studies identified a major effect QTL (met1) for metamorphic timing and expression of paedomorphosis in hybrid crosses between the biphasic Eastern tiger salamander (Ambystoma tigrinum tigrinum) and the paedomorphic Mexican axolotl (Ambystoma mexicanum). We used existing hybrid mapping panels and a newly created hybrid cross to map the met1 genomic region and determine the effect of met1 on larval growth, metamorphic timing, and gene expression in the brain. We show that met1 maps to the position of a urodele specific chromosome rearrangement on linkage group 2 that uniquely brought functionally-associated genes into linkage. Further, we found that \u3e 200 genes were differentially expressed during larval development as a function of met1 genotype. This list of differentially expressed genes is enriched for proteins that function in the mitochondria, providing evidence of a link between met1, thyroid hormone signaling, and mitochondrial energetics associated with metamorphosis. Finally, we found that met1 significantly affected metamorphic timing in hybrids, but not early larval growth rate. Collectively, our results show that met1 regulates species and morph-specific patterns of brain transcription and life history variation

Genomics of a Metamorphic Timing QT:: Met1 Maps to a Unique Genomic Position and Regulates Morph and Species-Specific Patterns of Brain Transcription

Very little is known about genetic factors that regulate life history transitions during ontogeny. Closely related tiger salamanders (Ambystoma species complex) show extreme variation in metamorphic timing, with some species foregoing metamorphosis altogether, an adaptive trait called paedomorphosis. Previous studies identified a major effect quantitative trait locus (met1) for metamorphic timing and expression of paedomorphosis in hybrid crosses between the biphasic Eastern tiger salamander (Ambystoma tigrinum tigrinum) and the paedomorphic Mexican axolotl (Ambystoma mexicanum).We used existing hybrid mapping panels and a newly created hybrid cross to map the met1 genomic region and determine the effect of met1 on larval growth, metamorphic timing, and gene expression in the brain. We show that met1 maps to the position of a urodele-specific chromosome rearrangement on linkage group 2 that uniquely brought functionally associated genes into linkage. Further more, we found that more than 200 genes were differentially expressed during larval development as a function of met1 genotype. This list of differentially expressed genes is enriched for proteins that function in the mitochondria, providing evidence of a link between met1, thyroid hormone signaling, and mitochondrial energetics associated with metamorphosis. Finally, we found that met1 significantly affected metamorphic timing in hybrids, but not early larval growth rate. Collectively, our results show that met1 regulates species and morph-specific patterns of brain transcription and life history variation

Marsupials (Didelphimorphia).

87 pages : illustrations (some color), maps ; 26 cm.This report is the third in our monographic series on mammalian diversity and Matses ethnomammalogy in the Yavarí-Ucayali interfluvial region of northeastern Peru. Based on taxonomic analysis of specimens collected in the region, we document the occurrence of 19 species of marsupials in the genera Caluromys, Glironia, Hyladelphys, Marmosa, Monodelphis, Metachirus, Chironectes, Didelphis, Philander, Gracilinanus, and Marmosops. Our principal taxonomic results include the following: (1) we provide a phylogenetic analysis of previously unpublished mitochondrial DNA (mtDNA) sequence data for Caluromys that supports the reciprocal monophyly of all currently recognized species in the genus but reveals substantial heterogeneity in one extralimital taxon; (2) we explain why Marmosa constantiae is the correct name for the southwestern Amazonian taxon previously known as Mar. demerarae, and we diagnose Mar. constantiae from Mar. rapposa, a superficially similar species from southern Peru, eastern Bolivia, and central Brazil; (3) we explain why Mar. rutteri is the correct name for one of the Amazonian species currently known as Mar. regina, and we restrict the latter name to the transAndean holotype; (4) we recognize Metachirus myosuros as a species distinct from Met. nudicaudatus based on morphological comparisons and a phylogenetic analysis of new mtDNA sequence data; and (5) we name a new species of Marmosops to honor the late Finnish-Peruvian naturalist Pekka Soini. Of the 19 marsupial species known to occur in the Yavarí-Ucayali interfluve, 16 have been recorded in sympatry at Nuevo San Juan, the Matses village where we based most of our fieldwork from 1995 to 1999. We explain why we believe the marsupial species list from Nuevo San Juan to be complete (or nearly so), and we compare it with a species list obtained by similarly intensive fieldwork at Paracou (French Guiana). Although Nuevo San Juan and Paracou are 2500 km apart on opposite sides of Amazonia, the same opossum genera are present at both sites, the lists differing only in the species represented in each fauna. We briefly discuss current explanations for spatial turnover in species of terrestrial vertebrates across Amazonian landscapes and provide evidence that the upper Amazon is a significant dispersal barrier for marsupials. Marsupials are not important to the Matses in any way. In keeping with their cultural inattention to mammals that are inconspicuous, harmless, and too small to be of dietary significance, the Matses lexically distinguish only a few kinds of opossums, and they are not close observers of opossum morphology or behavior

Didelphid marsupials.

177 p. : ill. (some col.) ; 26 cm. "Issued June 30, 2009." Includes bibliographical references (p. 142-156).This report summarizes a decade of morphological and molecular research on the phylogenetic relationships of didelphid marsupials (opossums), a substantially intact radiation of New World metatherian mammals. We review the comparative morphology of Recent opossums, emphasizing those anatomical systems from which taxonomically useful information is available for the majority of living genera and species, namely the integument, cranium, and dentition. Morphological similarities and differences among didelphids and other plesiomorphic marsupials (caenolestids, microbiotheriids, dasyurids, and peramelids) are also described. These observations, representing evolved differences in diverse functional-morphological systems, together with karyotypic information gleaned from the literature, provide the basis for coding 129 phylogenetic characters that we scored for 44 ingroup and seven outgroup taxa. Published information about the size, internal organization, chromosomal location, and physiological properties of five nuclear genes (BRCA1, DMP1, IRBP, RAG1, vWF) sequenced for this study suggest that these loci are unlinked, exist as single copies, are active in different tissues, and encode protein products with widely divergent functions. All of the sequenced fragments are long (>900 bp), free of ingroup alignment ambiguities, and translate to open reading frame. Nucleotide data from a total of 7320 aligned sites were obtained from 43 ingroup and seven outgroup taxa. Separate parsimony, likelihood, and Bayesian analyses of these six data partitions (morphology + karyotypes, five genes) resulted in highly congruent estimates of didelphid phylogeny with few examples of conflict among strongly supported nodes. Analyses of concatenated sequences and combined (nonmolecular + sequence) datasets effectively summarize all of the common signal recovered from separate analyses: a completely resolved ingroup phylogeny with high support statistics at most nodes. Remaining problems (not conclusively resolved in this study) include the position of the ingroup root and the relationships of three genera (Chacodelphys, Cryptonanus, Tlacuatzin) within their respective suprageneric clades. The history of didelphid classification is reviewed, and all previous systems are found to contain nonmonophyletic groups. A revised phylogenetic classification consistent with our analytic results includes the following higher taxa: Glironiinae (for Glironia), Caluromyinae (Caluromys and Caluromysiops), Hyladelphinae (Hyladelphys), Didelphinae (Marmosini, Metachirini, Didelphini, and Thylamyini), Marmosini (Marmosa, Monodelphis, and Tlacuatzin), Metachirini (Metachirus), Didelphini (Chironectes, Didelphis, Lutreolina, and Philander), and Thylamyini (Chacodelphys, Cryptonanus, Gracilinanus, Lestodelphys, Marmosops, and Thylamys). The probable relationships of several Neogene fossil genera are also discussed. To facilitate identifications, all Recent genera are redescribed, representative crania are illustrated, and a key is provided.American Museum of Natural History

Transcriptional response of Mexican axolotls to \u3ci\u3eAmbystoma tigrinum\u3c/i\u3e virus (ATV) infection

Background Very little is known about the immunological responses of amphibians to pathogens that are causing global population declines. We used a custom microarray gene chip to characterize gene expression responses of axolotls (Ambystoma mexicanum) to an emerging viral pathogen, Ambystoma tigrinum virus (ATV). Result At 0, 24, 72, and 144 hours post-infection, spleen and lung samples were removed for estimation of host mRNA abundance and viral load. A total of 158 up-regulated and 105 down-regulated genes were identified across all time points using statistical and fold level criteria. The presumptive functions of these genes suggest a robust innate immune and antiviral gene expression response is initiated by A. mexicanum as early as 24 hours after ATV infection. At 24 hours, we observed transcript abundance changes for genes that are associated with phagocytosis and cytokine signaling, complement, and other general immune and defense responses. By 144 hours, we observed gene expression changes indicating host-mediated cell death, inflammation, and cytotoxicity. Conclusion Although A. mexicanum appears to mount a robust innate immune response, we did not observe gene expression changes indicative of lymphocyte proliferation in the spleen, which is associated with clearance of Frog 3 iridovirus in adult Xenopus. We speculate that ATV may be especially lethal to A. mexicanum and related tiger salamanders because they lack proliferative lymphocyte responses that are needed to clear highly virulent iridoviruses. Genes identified from this study provide important new resources to investigate ATV disease pathology and host-pathogen dynamics in natural populations

Didelphid marsupial genus Marmosops.

70 pages : illustrations (some color), maps ; 26 cm.In this report, the first installment of a comprehensive revision of the didelphid marsupial genus Marmosops, we revise the species of the subgenus Sciophanes. Based on morphological character variation among almost 300 examined specimens--which we interpret in the context of a previously published analysis of molecular sequence data--this revision recognizes 12 valid species in three monophyletic species groups: the Parvidens Group (including M. pakaraimae, M. parvidens, and M. pinheiroi), the Fuscatus Group (M. carri, M. fuscatus, M. handleyi, and M. invictus), and the Bishopi Group (M. bishopi, M. juninensis, M. ojastii, and two new species). For each species we summarize information about type material, ecogeographic distribution, and diagnostic morphological characters. Despite our diligent search for relevant material in North and South American museums, the absence of any specimens of Sciophanes from vast Amazonian and Andean landscapes with seemingly suitable habitat suggests that significant range extensions and/or new species will result from future inventory fieldwork