Query tables in Parquet format for Deep DNAshape webserver

DNA shape query tables generated by Deep DNAshape model from 5-mer to 11-mer, separated in odd and even k-mers. Use odd.txt and bp.parquet for intra-bp features and minor groove features. Use even.txt and bpstep.parquet for inter-bp features. </p

Probing the role of a minor groove-linker histidine in Exd-Hox–DNA binding through molecular dynamics simulation

Molecular dynamics simulation protocols for Gromacs 2020.3 and binding free energy input files for g_mmpbsa</p