15 research outputs found
Constitutional Dialogue and Human Dignity: States and Transnational Constitutional Discourse
Freestanding and well-ordered two-dimensional
(2D) silica monolayers
with tetrahedral (<i>T</i>-silica) and octahedral (<i>O</i>-silica) building blocks are found to be stable by first-principles
calculations. <i>T</i>-silica is formed by corner-sharing
SiO<sub>4</sub> tetrahedrons in a rectangular network, and <i>O</i>-silica consists of edge-sharing SiO<sub>6</sub> octahedrons.
Moreover, the insulating <i>O</i>-silica is the strongest
silica monolayer, and can therefore act as a supporting substrate
for nanostructures in sensing and catalytic applications. Nanoribbons
of <i>T</i>-silica are metallic, while those of <i>O</i>-silica have band gaps regardless of the chirality and
width. We find the interaction of <i>O</i>-silica with graphene
to be weak, suggesting the possibility of its use as a monolayer dielectric
material for graphene-based devices. Considering that the sixfold-coordinated
silica exists at high pressure in the bulk phase, the prediction of
a small energy difference of <i>O</i>-silica with the synthesized
silica bilayer, together with the thermal stability at 1000 K, suggests
that synthesis of <i>O</i>-silica can be achieved in experiments
Amino Acid Analogue-Conjugated BN Nanomaterials in a Solvated Phase: First Principles Study of Topology-Dependent Interactions with a Monolayer and a (5,0) Nanotube
Using density functional theory and
an implicit solvation model,
the relationship between the topology of boron nitride (BN) nanomaterials
and the protonated/deprotonated states of amino acid analogues is
investigated. In the solvated phase, the calculated results show distinct
âphysisorbed versus chemisorbedâ conditions for the
analogues of arginine (Arg)- and aspartic acid (Asp)-conjugated BN
nanomaterials, including a monolayer (ML) and a small-diameter zigzag
nanotube (NT). Such a distinction does not depend on the functional
groups of amino acids but rather depends on the curvature-induced
interactions associated with the tubular configuration. Arg and Asp
interact with the BNML to form physisorbed complexes irrespective
of the state of the amino acids in the solvated phase. For the NT,
Arg and Asp form chemisorbed complexes, and the distinct nature of
bonds between the donor electron moieties of N<sub>(Arg)</sub> and
O<sub>(Asp)</sub> and the boron of the tubular surface is revealed
by the natural bond orbital analysis; stronger s-type bonds for the
deprotonated conjugated complexes and slightly weaker p-type dominated
bonds for the protonated conjugated complexes. The interaction of
neutral Trp with BN nanomaterials results in physisorbed configurations
through Ď-stacking interactions with the indole ring of the
Trp and BN nanomaterials. The calculated results form the basis for
a theoretical study of more complex protein macromolecules interacting
with nanomaterials under physiological conditions
Controlling the Performance of a Three-Terminal Molecular Transistor: Conformational versus Conventional Gating
The effect of conformational changes in the gate arm
of a three-terminal
device is investigated. In the ground state, the gate (triphenyl)
arm is nonplanar, where the middle phenyl ring is approximately 30°
out-of-plane relative to other two rings. At this geometry, the calculated
tunnel current (<i>I</i><sub>d</sub>) as a function of external
bias (<i>V</i><sub>ds</sub>) across the two DâA substituted
arms exhibits a typical insulator-semiconductor behavior. Similar <i>I</i><sub>d</sub>â<i>V</i><sub>ds</sub> characteristics
is calculated when planarity of the triphenyl arm is restored. However,
a significant increase, by more than an order of magnitude, and a
distinct variation in the current are predicted in its operational
mode (<i>V</i><sub>ds</sub> > 1.5 V) when additional
nonplanarity
is induced in the triphenyl chain. Analysis of the results suggest
that, unlike in âvoltageâ gating, neither the HOMOâLUMO
gap nor the dipole moment of the system undergo significant changes
due to pure conformational gating, as observed in this study. Instead,
the observed conformational gating affects the current via localization/delocalization
of the electronic wave function in the conduction channel. Furthermore,
the tunneling current corresponding to conformational gating in two
different directions appears to exhibit oscillatory nature with a
phase factor of Ď/2 in the presence of the gate field. The current
modulation is found to reach its maximum only under exclusive effect
of voltage or conformational gating and diminishes when both of them
are present
Amino-Acid-Conjugated Gold Clusters: Interaction of Alanine and Tryptophan with Au<sub>8</sub> and Au<sub>20</sub>
The
stability and electronic properties of gold (Au) clusters interacting
with the amino acids alanine (Ala) and tryptophan (Trp) in their canonical
and zwitterionic configurations were investigated using first-principles
density functional theory (DFT). We found that the geometrical structures
of the Au clusters and the polarities of the amino acids determine
the nature of the interactions in the gas and solvent phases. In the
gas phase, the Au<sub>8</sub> (<i>D</i><sub>4<i>h</i></sub>) and Au<sub>20</sub> (<i>T</i><sub><i>d</i></sub>) clusters prefer single-site interactions through the amine
group for the canonical amino acids, whereas in the solvent phase,
the carboxylic site is preferred for the zwitterionic amino acids.
The limited screening of the intermolecular interactions introduced
by the solvent medium for the canonical forms of Ala and Trp conjugated
with the Au<sub><i>n</i></sub> complexes suggests that the
bonding is primarily covalent in nature. The screening is significantly
more pronounced for the zwitterionic complexes for which the electrostatic
interactions dominate. The cluster sizes and configurations define
the extent of the interactions and the overall stability of the complexes.
The structures of the Au<sub><i>n</i></sub> clusters govern
the charge distribution and electrostatic potential, directing the
selectivity toward the preferential binding sites with the Ala and
Trp amino acids
Carbon-Doped Boron Nitride Nanomesh: Stability and Electronic Properties of Adsorbed Hydrogen and Oxygen
Atomic or molecular
preferential adsorption on a surface template
provides a facile and feasible means of fabricating ordered low-dimensional
nanostructures with tailored functionality for novel applications.
In this study, we demonstrate that functionality of C-doped BN nanomesh
can be tailored by an external electric field which modifies the strength
of the adsorbate binding to the nanomesh. Specifically, selective
binding of H, O, H<sub>2</sub>, and O<sub>2</sub> at various sites
of the C-doped nanomeshî¸within the pore, on the wire, and at
an intermediate siteî¸is investigated with density functional
theory. The calculated results find that atomic species are bound,
but the molecular species are not bound to the nanomesh. We have shown
that it is possible to modify the adsorbate binding energy with the
application of an external field, such that the molecular H<sub>2</sub> can be bound at the pore region of the nanomesh. Interestingly,
the work function of the nanomesh has a close correlation with the
adsorbate binding energy with the BN nanomesh
Hierarchical Self-Assembly of Noncanonical Guanine Nucleobases on Graphene
Self-assembly characterizes the fundamental
basis toward realizing
the formation of highly ordered hierarchical heterostructures. A systematic
approach toward the supramolecular self-assembly of free-standing
guanine nucleobases and the role of graphene as a substrate in directing
the monolayer assembly are investigated using the molecular dynamics
simulation. We find that the free-standing bases in gas phase aggregate
into clusters dominated by intermolecular H-bonds, whereas in solvent,
substantial screening of intermolecular interactions results in Ď-stacked
configurations. Interestingly, graphene facilitates the monolayer
assembly of the bases mediated through the baseâsubstrate ĎâĎ
stacking. The bases assemble in a highly compact network in gas phase,
whereas in solvent, a high degree of immobilization is attributed
to the disruption of intermolecular interactions. Graphene-induced
stabilization/aggregation of free-standing guanine bases appears as
one of the prerequisites governing molecular ordering and assembly
at the solid/liquid interface. The results demonstrate an interplay
between intermolecular and Ď-stacking interactions, central
to the molecular recognition, aggregation dynamics, and patterned
growth of functional molecules on two-dimensional nanomaterials
Degradation of Alkali-Based Photocathodes from Exposure to Residual Gases: A First-Principles Study
Photocathodes are
a key component in the production of electron
beams in systems such as X-ray free-electron lasers and X-ray energy-recovery
linacs. Alkali-based materials display high quantum efficiency (QE),
however, their QE undergoes degradation faster than metal photocathodes
even in the high vacuum conditions where they operate. The high reactivity
of alkali-based surfaces points to surface reactions with residual
gases as one of the most important factors for the degradation of
QE. To advance the understanding on the degradation of the QE, we
investigated the surface reactivity of common residual gas molecules
(e.g., O<sub>2</sub>, CO<sub>2</sub>, CO, H<sub>2</sub>O, N<sub>2</sub>, and H<sub>2</sub>) on one of the best-known alkali-based photocathode
materials, cesium antimonide (Cs<sub>3</sub>Sb), using first-principles
calculations based on density functional theory. The reaction sites,
adsorption energy, and effect in the local electronic structure upon
reaction of these molecules on (001), (110), and (111) surfaces of
Cs<sub>3</sub>Sb were computed and analyzed. The adsorption energy
of these molecules on Cs<sub>3</sub>Sb follows the trend of O<sub>2</sub> (â4.5 eV) > CO<sub>2</sub> (â1.9 eV) >
H<sub>2</sub>O (â1.0 eV) > CO (â0.8 eV) > N<sub>2</sub> (â0.3
eV) â H<sub>2</sub> (â0.2 eV), which agrees with experimental
data on the effect of these gases on the degradation of QE. The interaction
strength is determined by the charge transfer from the surfaces to
the molecules. The adsorption and dissociation of O containing molecules
modify the surface chemistry such as the composition, structure, charge
distribution, surface dipole, and work function of Cs<sub>3</sub>Sb,
resulting in the degradation of QE with exposure to O<sub>2</sub>,
CO<sub>2</sub>, H<sub>2</sub>O, and CO
Can Single-Atom Change Affect Electron Transport Properties of Molecular Nanostructures such as C<sub>60</sub> Fullerene?
At the nanoscale, even a single atom change in the structure can noticeably alter the properties, and therefore, the application space of materials. We examine this critical behavior of nanomaterials using fullerene as a model structure by a first-principles density functional theory method coupled with nonequilibrium Greenâs function formalism. Two different configurations, namely, (i) endohedral (B@C<sub>60</sub> and N@C<sub>60</sub>), in which the doping atom is encapsulated inside the fullerene cage, and (ii) substitutional (BC<sub>59</sub> and NC<sub>59</sub>), in which the doping atom replaces a C atom on the fullerene cage, are considered. The calculated results reveal that the conductivity for the doped fullerene is higher than that of the pristine fullerene. In the low-bias regime, the current (I) voltage (V) characteristic of the endohedral as well as the substitutional configurations are very similar. However, as the external bias increases beyond 1.0 V, the substitutional BC<sub>59</sub> fullerene exhibits a considerably higher magnitude of current than all other species considered, thus suggesting that it can be an effective semiconductor in <i>p</i>-type devices
MoS<sub>2</sub> Quantum Dot: Effects of Passivation, Additional Layer, and <i>h</i>âBN Substrate on Its Stability and Electronic Properties
The
inherent problem of a zero-band gap in graphene has provided
motivation to search for the next-generation electronic materials
including transition metal dichalcogenides, such as MoS<sub>2</sub>. In this study, a triangular MoS<sub>2</sub> quantum dot (QD) is
investigated to see the effects of passivation, additional layer,
and the <i>h</i>-BN substrate on its geometry, energetics,
and electronic properties. The results of density functional theory
calculations show that the monolayer QD is metallic in nature, mainly
due to the coordinatively unsaturated Mo atoms at the edges. This
is reaffirmed by the passivation of the S edge atoms, which does not
significantly modify its metallic character. Analysis of the chemical
topology finds that the MoâS bonds associated with the edge
atoms are predominantly covalent despite the presence of metallic
states. A bilayer QD is more stable than its monolayer counterpart,
mainly due to stabilization of the dangling bonds of the edge atoms.
The degree of the metallic character is also considerably reduced
as demonstrated by the <i>I</i>â<i>V</i> characteristics of a bilayer QD. The binding strength of a monolayer
QD to the <i>h-</i>BN substrate is predicted to be weak.
The substrate-induced modifications in the electronic structure of
the quantum dot are therefore not discernible. We find that the metallic
character of the QD deposited on the insulating substrate can therefore
be exploited to extend the functionality of MoS<sub>2</sub>-based
nanostructures in catalysis and electronics applications at the nanoscale
level
Nature of Interaction between Semiconducting Nanostructures and Biomolecules: Chalcogenide QDs and BNNT with DNA Molecules
Interactions of DNA oligomers with
two categories of semiconducting
nanostructuresî¸chalcogenide quantum dots (QDs) and boron nitride
nanotubes (BNNTs)î¸owing to their widespread presence in bio-inspired
processes are investigated using the first-principles density functional
theory and continuum solvent model. The chalcogenide QDs interact
strongly at their metal centers featuring electrostatic interaction
with DNA oligomers at oxygen or nitrogen site, while BNNTs form covalent
bonds with DNA oligomers at multiple surface sites. It is found that
the different bonding nature leads to distinctly different response
to the aqueous environment; the presence of solvent drastically reduces
the binding strength of nucleobases with the QDs due to the strong
electrostatic screening. This is not the case with BNNTs for which
the covalent bonding is barely affected by the solvent. This study
thus clearly shows how a solvent medium influences chemical interactions
providing guidance for technological applications of bioconjugated
systems