The Parameterized Complexity of Domination-type Problems and Application to Linear Codes

We study the parameterized complexity of domination-type problems. (sigma,rho)-domination is a general and unifying framework introduced by Telle: a set D of vertices of a graph G is (sigma,rho)-dominating if for any v in D, |N(v)\cap D| in sigma and for any $v\notin D, |N(v)\cap D| in rho. We mainly show that for any sigma and rho the problem of (sigma,rho)-domination is W[2] when parameterized by the size of the dominating set. This general statement is optimal in the sense that several particular instances of (sigma,rho)-domination are W[2]-complete (e.g. Dominating Set). We also prove that (sigma,rho)-domination is W[2] for the dual parameterization, i.e. when parameterized by the size of the dominated set. We extend this result to a class of domination-type problems which do not fall into the (sigma,rho)-domination framework, including Connected Dominating Set. We also consider problems of coding theory which are related to domination-type problems with parity constraints. In particular, we prove that the problem of the minimal distance of a linear code over Fq is W[2] for both standard and dual parameterizations, and W[1]-hard for the dual parameterization. To prove W[2]-membership of the domination-type problems we extend the Turing-way to parameterized complexity by introducing a new kind of non deterministic Turing machine with the ability to perform `blind' transitions, i.e. transitions which do not depend on the content of the tapes. We prove that the corresponding problem Short Blind Multi-Tape Non-Deterministic Turing Machine is W[2]-complete. We believe that this new machine can be used to prove W[2]-membership of other problems, not necessarily related to dominationComment: 19 pages, 2 figure

Phase Transition and Strong Predictability

The statistical mechanical interpretation of algorithmic information theory (AIT, for short) was introduced and developed in our former work [K. Tadaki, Local Proceedings of CiE 2008, pp.425-434, 2008], where we introduced the notion of thermodynamic quantities into AIT. These quantities are real functions of temperature T>0. The values of all the thermodynamic quantities diverge when T exceeds 1. This phenomenon corresponds to phase transition in statistical mechanics. In this paper we introduce the notion of strong predictability for an infinite binary sequence and then apply it to the partition function Z(T), which is one of the thermodynamic quantities in AIT. We then reveal a new computational aspect of the phase transition in AIT by showing the critical difference of the behavior of Z(T) between T=1 and T<1 in terms of the strong predictability for the base-two expansion of Z(T).Comment: 5 pages, LaTeX2e, no figure

The zero exemplar distance problem

Given two genomes with duplicate genes, \textsc{Zero Exemplar Distance} is the problem of deciding whether the two genomes can be reduced to the same genome without duplicate genes by deleting all but one copy of each gene in each genome. Blin, Fertin, Sikora, and Vialette recently proved that \textsc{Zero Exemplar Distance} for monochromosomal genomes is NP-hard even if each gene appears at most two times in each genome, thereby settling an important open question on genome rearrangement in the exemplar model. In this paper, we give a very simple alternative proof of this result. We also study the problem \textsc{Zero Exemplar Distance} for multichromosomal genomes without gene order, and prove the analogous result that it is also NP-hard even if each gene appears at most two times in each genome. For the positive direction, we show that both variants of \textsc{Zero Exemplar Distance} admit polynomial-time algorithms if each gene appears exactly once in one genome and at least once in the other genome. In addition, we present a polynomial-time algorithm for the related problem \textsc{Exemplar Longest Common Subsequence} in the special case that each mandatory symbol appears exactly once in one input sequence and at least once in the other input sequence. This answers an open question of Bonizzoni et al. We also show that \textsc{Zero Exemplar Distance} for multichromosomal genomes without gene order is fixed-parameter tractable if the parameter is the maximum number of chromosomes in each genome.Comment: Strengthened and reorganize

The parameterized complexity of some geometric problems in unbounded dimension

We study the parameterized complexity of the following fundamental geometric problems with respect to the dimension $d$: i) Given $n$ points in \Rd, compute their minimum enclosing cylinder. ii) Given two $n$-point sets in \Rd, decide whether they can be separated by two hyperplanes. iii) Given a system of $n$ linear inequalities with $d$ variables, find a maximum-size feasible subsystem. We show that (the decision versions of) all these problems are W[1]-hard when parameterized by the dimension $d$. %and hence not solvable in ${O}(f(d)n^c)$ time, for any computable function $f$ and constant $c$ %(unless FPT=W[1]). Our reductions also give a $n^{\Omega(d)}$-time lower bound (under the Exponential Time Hypothesis)

A New Lower Bound on the Maximum Number of Satisfied Clauses in Max-SAT and its Algorithmic Applications

A pair of unit clauses is called conflicting if it is of the form $(x)$, $(\bar{x})$. A CNF formula is unit-conflict free (UCF) if it contains no pair of conflicting unit clauses. Lieberherr and Specker (J. ACM 28, 1981) showed that for each UCF CNF formula with $m$ clauses we can simultaneously satisfy at least \pp m clauses, where \pp =(\sqrt{5}-1)/2. We improve the Lieberherr-Specker bound by showing that for each UCF CNF formula $F$ with $m$ clauses we can find, in polynomial time, a subformula $F'$ with $m'$ clauses such that we can simultaneously satisfy at least \pp m+(1-\pp)m'+(2-3\pp)n"/2 clauses (in $F$), where $n"$ is the number of variables in $F$ which are not in $F'$. We consider two parameterized versions of MAX-SAT, where the parameter is the number of satisfied clauses above the bounds $m/2$ and $m(\sqrt{5}-1)/2$. The former bound is tight for general formulas, and the later is tight for UCF formulas. Mahajan and Raman (J. Algorithms 31, 1999) showed that every instance of the first parameterized problem can be transformed, in polynomial time, into an equivalent one with at most $6k+3$ variables and $10k$ clauses. We improve this to $4k$ variables and $(2\sqrt{5}+4)k$ clauses. Mahajan and Raman conjectured that the second parameterized problem is fixed-parameter tractable (FPT). We show that the problem is indeed FPT by describing a polynomial-time algorithm that transforms any problem instance into an equivalent one with at most $(7+3\sqrt{5})k$ variables. Our results are obtained using our improvement of the Lieberherr-Specker bound above

Upper and Lower Bounds for Weak Backdoor Set Detection

We obtain upper and lower bounds for running times of exponential time algorithms for the detection of weak backdoor sets of 3CNF formulas, considering various base classes. These results include (omitting polynomial factors), (i) a 4.54^k algorithm to detect whether there is a weak backdoor set of at most k variables into the class of Horn formulas; (ii) a 2.27^k algorithm to detect whether there is a weak backdoor set of at most k variables into the class of Krom formulas. These bounds improve an earlier known bound of 6^k. We also prove a 2^k lower bound for these problems, subject to the Strong Exponential Time Hypothesis.Comment: A short version will appear in the proceedings of the 16th International Conference on Theory and Applications of Satisfiability Testin

Systems of Linear Equations over F2\mathbb{F}_2 and Problems Parameterized Above Average

In the problem Max Lin, we are given a system $Az=b$ of $m$ linear equations with $n$ variables over $\mathbb{F}_2$ in which each equation is assigned a positive weight and we wish to find an assignment of values to the variables that maximizes the excess, which is the total weight of satisfied equations minus the total weight of falsified equations. Using an algebraic approach, we obtain a lower bound for the maximum excess. Max Lin Above Average (Max Lin AA) is a parameterized version of Max Lin introduced by Mahajan et al. (Proc. IWPEC'06 and J. Comput. Syst. Sci. 75, 2009). In Max Lin AA all weights are integral and we are to decide whether the maximum excess is at least $k$, where $k$ is the parameter. It is not hard to see that we may assume that no two equations in $Az=b$ have the same left-hand side and $n={\rm rank A}$. Using our maximum excess results, we prove that, under these assumptions, Max Lin AA is fixed-parameter tractable for a wide special case: $m\le 2^{p(n)}$ for an arbitrary fixed function $p(n)=o(n)$. Max $r$-Lin AA is a special case of Max Lin AA, where each equation has at most $r$ variables. In Max Exact $r$-SAT AA we are given a multiset of $m$ clauses on $n$ variables such that each clause has $r$ variables and asked whether there is a truth assignment to the $n$ variables that satisfies at least $(1-2^{-r})m + k2^{-r}$ clauses. Using our maximum excess results, we prove that for each fixed $r\ge 2$, Max $r$-Lin AA and Max Exact $r$-SAT AA can be solved in time $2^{O(k \log k)}+m^{O(1)}.$ This improves $2^{O(k^2)}+m^{O(1)}$-time algorithms for the two problems obtained by Gutin et al. (IWPEC 2009) and Alon et al. (SODA 2010), respectively

Augmenting graphs to minimize the diameter

We study the problem of augmenting a weighted graph by inserting edges of bounded total cost while minimizing the diameter of the augmented graph. Our main result is an FPT 4-approximation algorithm for the problem.Comment: 15 pages, 3 figure

Fixed parameter tractable algorithms in combinatorial topology

To enumerate 3-manifold triangulations with a given property, one typically begins with a set of potential face pairing graphs (also known as dual 1-skeletons), and then attempts to flesh each graph out into full triangulations using an exponential-time enumeration. However, asymptotically most graphs do not result in any 3-manifold triangulation, which leads to significant "wasted time" in topological enumeration algorithms. Here we give a new algorithm to determine whether a given face pairing graph supports any 3-manifold triangulation, and show this to be fixed parameter tractable in the treewidth of the graph. We extend this result to a "meta-theorem" by defining a broad class of properties of triangulations, each with a corresponding fixed parameter tractable existence algorithm. We explicitly implement this algorithm in the most generic setting, and we identify heuristics that in practice are seen to mitigate the large constants that so often occur in parameterised complexity, highlighting the practicality of our techniques.Comment: 16 pages, 9 figure