Additional file 5: of Construction of high-density genetic map and QTL mapping of yield-related and two quality traits in soybean RILs population by RAD-sequencing

Annotation description of five gene groups based on GO analysis. (PDF 28 kb

Additional file 3: of Construction of high-density genetic map and QTL mapping of yield-related and two quality traits in soybean RILs population by RAD-sequencing

QTLs detected in RILs population that reported by previously studies. **marked by QTL name indicates a new, stable QTL that was detected in both years; aChr indicates chromosome; bLOD indicates the logarithm of odds score; c Percentage of phenotypic variation explained; d Related QTLs have been reported in the previous studies of the region which was identified in the Zhonghuang 24 and Huaxi 3 RILs population. (PDF 63 kb

Additional file 1: of Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map

Consists of Tables S1–S8. Table S1. Information and relationships of the sesame high-density genetic map to genome assembly; Table S2. Bin marker information for the high-density genetic map; Table S3. List of the scaffolds anchored onto chromosomes; Table S4. The 6 split scaffolds and the 4 relocated scaffolds; Table S5. Variation in plant height and related traits in the population across field trials. Table S6. List of genes in QTLs qPH-8.2 and qPH-3.3; Table S7. List of genes in the qSCl-8.1 QTL; Table S8. List of genes in the qSCb-4.1 QTL. (XLSX 152 kb

Additional file 7: of Dissection of complicate genetic architecture and breeding perspective of cottonseed traits by genome-wide association study

Table S6. The SNP genotypes achieving the minimum genetic value of seed traits in designed lines for QTSs (DOC 210 kb

Additional file 1: of Dissection of complicate genetic architecture and breeding perspective of cottonseed traits by genome-wide association study

Figure S2. Population structure of 316 cotton accessions based on pruned unlinked SNPs. (DOC 69 kb

Additional file 5: of Dissection of complicate genetic architecture and breeding perspective of cottonseed traits by genome-wide association study

Table S4. Predicted genetic values (G) for QQ, qq, Qq, superior homozygous line (SL), and superior hybrids (SH) of seven cottonseed traits. (DOC 114 kb

Additional file 6: of Dissection of complicate genetic architecture and breeding perspective of cottonseed traits by genome-wide association study

Table S5. The SNP genotypes achieving the maximum genetic value of seed traits in designed superior homozygous lines and hybrids at the QTSs absent in the Table 5. (DOC 168 kb

Additional file 3: of Dissection of complicate genetic architecture and breeding perspective of cottonseed traits by genome-wide association study

Table S3. The other genome-wide significant QTSs associated with five fatty acids. (DOC 185 kb

Additional file 4: of Dissection of complicate genetic architecture and breeding perspective of cottonseed traits by genome-wide association study

Table S2. Phenotypic and genotypic correlation between seven cottonseed traits. (DOC 58 kb

Additional file 9: of Dissection of complicate genetic architecture and breeding perspective of cottonseed traits by genome-wide association study

Table S1. The information of 316 accessions and the summary statistics of seven seed traits (DOC 321 kb