Topics in Field Theory

This thesis consists of different projects in classical and quantum field theory on a curved background which are connected by a common usage of theoretical ideas as well as cal- culation techniques. The introduction clarifies such connections. In the second chapter we apply the Dirac constraint formalism to the second and first order 1 + 1 dimensional gravitational action coupled to a scalar field. The third chapter is devoted to a calculation of the one loop effective action for a spinor field coupled to a constant background chiral vector field. In the fourth chapter we find a new expression for the running coupling through the conformal anomaly in a strong background gauge field. We compare this expression with the value obtained by the standard procedure. This expression should be useful for finding all loop order contributions to the effective action of a gauge the- ory. The second part of the thesis is devoted to the applied aspects of the AdS/CFT correspondence and related issues. In the fifth chapter we review a three dimensional model of a strongly correlated holographic plasma dual to a 3 + 1 dimensional gravity model of exotic black holes. Then we consider the extension of the Correlated Stability Conjecture which attempts to connect mechanical instabilities of black holes with the thermodynamical instabilities of the related holographic plasma by adding to the the- ory additional conserved chargers connected with the values of the scalar field at the boundary of a black brane. Also, we propose a simple thermodynamic model to test the generalized conjecture. Then, we focus on some transport properties of the model. Namely we check Eling-Oz formula for the bulk-to-shear viscosity of holographic plasmas for different temperature regimes. The last chapter is devoted to a CFT calculation of the entanglement entropy on a sphere for free theories. We try to connect the results with the calculations based on AdS/CFT approach. For this purpose the heat kernel technique is used in this chapter. In our discussion proposals for future work are stated

Eling-Oz Formula for Exotic Hairy Black Holes

We checked Eling-Oz formula [1] for the bulk viscosity of the holographic fluid dual to the exotic black holes [2]. Initially, Eling and Oz argued that the formula is valid in the high temperature and adiabatic limits. In [3] the validity of the formula for \caln=2^* plasma and cascading gauge theory was pushed forward for arbitrary temperatures. We successfully verified the formula with the computations of the bulk viscosity [4,5] for a wide range of the temperatures. Moreover, it correctly reproduces the critical behavior in the vicinity of the critical point, where the bulk-to-shear viscosity diverges.Comment: 9 pages, 4 figures, references added and corrected, minor clarifications added, accepted by Phys. Lett.

Can the correlated stability conjecture be saved?

Correlated stability conjecture (CSC) proposed by Gubser and Mitra [1,2] linked the thermodynamic and classical (in)stabilities of black branes. In [3] it was shown that the thermodynamic instabilities, specifically the negative specific heat, indeed result in the instabilities in the hydrodynamic spectrum of holographically dual plasma excitations. Counter-examples of CSC were presented in the context of black branes with scalar hair undergoing a second-order phase transition [4,5]. The latter translationary invariant horizons have scalar hair, raising the question whether the asymptotic parameters of the scalar hair can be appropriately interpreted as additional charges leading to a generalization of the thermodynamic stability criterion. In this paper we show that the generalization of the thermodynamic stability criterion of this type can not save CSC. We further present a simple statistical model which makes it clear that thermodynamic and dynamical (in)stabilities generically are not correlated.Comment: 9 pages, 2 figures; v2: JHEP versio

Metagenomic profiling of viral and microbial communities from the pox lesions of lumpy skin disease virus and sheeppox virus-infected hosts

IntroductionIt has been recognized that capripoxvirus infections have a strong cutaneous tropism with the manifestation of skin lesions in the form of nodules and scabs in the respective hosts, followed by necrosis and sloughing off. Considering that the skin microbiota is a complex community of commensal bacteria, fungi and viruses that are influenced by infections leading to pathological states, there is no evidence on how the skin microbiome is affected during capripoxvirus pathogenesis.MethodsIn this study, shotgun metagenomic sequencing was used to investigate the microbiome in pox lesions from hosts infected with lumpy skin disease virus and sheep pox virus.ResultsThe analysis revealed a high degree of variability in bacterial community structures across affected skin samples, indicating the importance of specific commensal microorganisms colonizing individual hosts. The most common and abundant bacteria found in scab samples were Fusobacterium necrophorum, Streptococcus dysgalactiae, Helcococcus ovis and Trueperella pyogenes, irrespective of host. Bacterial reads belonging to the genera Moraxella, Mannheimia, Corynebacterium, Staphylococcus and Micrococcus were identified.DiscussionThis study is the first to investigate capripox virus-associated changes in the skin microbiome using whole-genome metagenomic profiling. The findings will provide a basis for further investigation into capripoxvirus pathogenesis. In addition, this study highlights the challenge of selecting an optimal bioinformatics approach for the analysis of metagenomic data in clinical and veterinary practice. For example, direct classification of reads using a kmer-based algorithm resulted in a significant number of systematic false positives, which may be attributed to the peculiarities of the algorithm and database selection. On the contrary, the process of de novo assembly requires a large number of target reads from the symbiotic microbial community. In this work, the obtained sequencing data were processed by three different approaches, including direct classification of reads based on k-mers, mapping of reads to a marker gene database, and de novo assembly and binning of metagenomic contigs. The advantages and disadvantages of these techniques and their practicality in veterinary settings are discussed in relation to the results obtained

Ancient Plasmodium genomes shed light on the history of human malaria

Malaria-causing protozoa of the genus Plasmodium have exerted one of the strongest selective pressures on the human genome, and resistance alleles provide biomolecular footprints that outline the historical reach of these species1. Nevertheless, debate persists over when and how malaria parasites emerged as human pathogens and spread around the globe1,2. To address these questions, we generated high-coverage ancient mitochondrial and nuclear genome-wide data from P. falciparum, P. vivax and P. malariae from 16 countries spanning around 5,500 years of human history. We identified P. vivax and P. falciparum across geographically disparate regions of Eurasia from as early as the fourth and first millennia bce, respectively; for P. vivax, this evidence pre-dates textual references by several millennia3. Genomic analysis supports distinct disease histories for P. falciparum and P. vivax in the Americas: similarities between now-eliminated European and peri-contact South American strains indicate that European colonizers were the source of American P. vivax, whereas the trans-Atlantic slave trade probably introduced P. falciparum into the Americas. Our data underscore the role of cross-cultural contacts in the dissemination of malaria, laying the biomolecular foundation for future palaeo-epidemiological research into the impact of Plasmodium parasites on human history. Finally, our unexpected discovery of P. falciparum in the high-altitude Himalayas provides a rare case study in which individual mobility can be inferred from infection status, adding to our knowledge of cross-cultural connectivity in the region nearly three millennia ago.This project was funded by the National Science Foundation, grants BCS-2141896 and BCS-1528698; the European Research Council (ERC) under the European Union’s Horizon 2020 programme, grants 851511-MICROSCOPE (to S. Schiffels), 771234-PALEoRIDER (to W.H.) and starting grant 805268-CoDisEASe (to K.I.B.); and the ERC starting grant Waves ERC758967 (supporting K. Nägele and S.C.). We thank the Max Planck-Harvard Research Center for the Archaeoscience of the Ancient Mediterranean for supporting M. Michel, E. Skourtanioti, A.M., R.A.B., L.C.B., G.U.N., N.S., V.V.-M., M. McCormick, P.W.S., C.W. and J.K.; the Kone Foundation for supporting E.K.G. and A.S.; and the Faculty of Medicine and the Faculty of Biological and Environmental Sciences at the University of Helsinki for grants to E.K.G. A.S. thanks the Magnus Ehrnrooth Foundation, the Sigrid Jusélius Foundation, the Finnish Cultural Foundation, the Academy of Finland, the Life and Health Medical Foundation and the Finnish Society of Sciences and Letters. M.C.B. acknowledges funding from: research project PID2020-116196GB-I00 funded by MCIN/AEI/10.13039/501100011033; the Spanish Ministry of Culture; the Chiang Ching Kuo Foundation; Fundación Palarq; the EU FP7 Marie Curie Zukunftskolleg Incoming Fellowship Programme, University of Konstanz (grant 291784); STAR2-Santander Universidades and Ministry of Education, Culture and Sports; and CEI 2015 project Cantabria Campus Internacional. M.E. received support from the Czech Academy of Sciences award Praemium Academiae and project RVO 67985912 of the Institute of Archaeology of the Czech Academy of Sciences, Prague. This work has been funded within project PID2020-115956GB-I00 ‘Origen y conformación del Bronce Valenciano’, granted by the Ministry of Science and Innovation of the Government of Spain, and grants from the Canadian Institutes for Health Research (MZI187236), Research Nova Scotia (RNS 2023-2565) and The Center for Health Research in Developing Countries. D.K. is the Canada research chair in translational vaccinology and inflammation. R.L.K. acknowledges support from a 2019 University of Otago research grant (Human health and adaptation along Silk Roads, a bioarchaeological investigation of a medieval Uzbek cemetery). P.O. thanks the Jane and Aatos Erkko Foundation, the Finnish Cultural Foundation and the Academy of Finland. S. Peltola received support from the Emil Aaltonen Foundation and the Ella and Georg Ehrnrooth Foundation. D.C.S.-G. thanks the Generalitat Valenciana (CIDEGENT/2019/061). E.W.K. acknowledges support from the DEEPDEAD project, HERA-UP, CRP (15.055) and the Horizon 2020 programme (grant 649307). M. Spyrou thanks the Elite program for postdocs of the Baden-Württemberg Stiftung. Open access funding provided by Max Planck Society