Additional file 9: of Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

Table S5. The differentially expressed mRNAs by lncRNA-seq. (XLS 831 kb

Additional file 2: of Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

Table S2. The interaction information of rice root differential genes and co-expressed lncRNAs in cis. (XLSX 15 kb

Additional file 3: of Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

Table S6. Pathways and proportions after KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis of differentially expressed target genes in cis in the root. KEGG pathways significantly enriched in our experiments were displayed. (XLS 14 kb

Additional file 5: of Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

Table S7. Pathways and proportions after KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis of differentially expressed target genes in trans in the root. KEGG pathways significantly enriched in our experiments were displayed. (XLS 14 kb

Additional file 7: of Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

Table S4. The qPCR used transcripts and their primers. We made a random selection of 10 genes in the genes’ data of lncRNA-seq. According to the random criteria, so we have selected both the significantly different expressing part and the nonsignificantly part to enhance the reliability of the results by lncRNA-seq. (XLS 15 kb

Additional file 4: of Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

Table S3. The interaction information of rice root differential genes and co-expressed lncRNAs in trans. (XLSX 870 kb

Additional file 8: of Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress

Figure S2. Comparison of the log2 (FC) of 10 selected transcripts using RNA-Seq and qRT-PCR. (TIFF 15 kb