Additional file 4 of Comprehensive research into prognostic and immune signatures of transcription factor family in breast cancer

Additional file 4: Figure S2. Kaplan–Meier curves for OS prediction in BRCA subtypes of A Her2 or Basal and B M1

Additional file 1 of Comprehensive research into prognostic and immune signatures of transcription factor family in breast cancer

Additional file 1. R code and data

Additional file 5 of Comprehensive research into prognostic and immune signatures of transcription factor family in breast cancer

Additional file 5: Figure S3. Heatmap of DNA methylation expression levels of the TFDEGs in BRCA by MethSurv platform

Additional file 2 of Comprehensive research into prognostic and immune signatures of transcription factor family in breast cancer

Additional file 2. Table S1. The TF family genes

Additional file 7 of Comprehensive research into prognostic and immune signatures of transcription factor family in breast cancer

Additional file 7: Figure S4. Correlations between expressions of TFDEGs and immune infiltration profiles in BRCA. The figure shows the expression of each gene associated with tumor purity and several tumor-infiltrating immune cell markers, such as B cell, CD8+ T cell, CD4 + T cell, macrophage, neutrophil, and dendritic cell markers

Additional file 6 of Comprehensive research into prognostic and immune signatures of transcription factor family in breast cancer

Additional file 6: Table S2. Prognostic Value of Single CpG of the TFDEGs in BRCA by MethSurv platform

Historic pathology images.

<p>(a) Pathology grades 1 and 2, (b) pathology grade 3 and (c) pathology grade.</p

Cross phenotype association heat map (46 traits/79 genes with rare variants only).

<p>The horizontal axis denotes the traits and the vertical axis denotes the genes. The color represented P-values. The smaller the P-value the deeper the red color.</p

The power of curves as a function of sample sizes of 11 statistics for collectively testing the association of the gene including both rare and common variants with 10 traits with high correlations for the scenario 1 at the significance level <i>α</i> = 0.05.

<p>The power of curves as a function of sample sizes of 11 statistics for collectively testing the association of the gene including both rare and common variants with 10 traits with high correlations for the scenario 1 at the significance level <i>α</i> = 0.05.</p

Computational time (seconds)of 10 statistics for gene-based whole genome association analysis of 46 traits.

<p>Computational time (seconds)of 10 statistics for gene-based whole genome association analysis of 46 traits.</p