Pulses of sub-ice microbial activity during winter: evidence from nitrate concentrations and silicon isotopes in the Lena River

Large Arctic rivers are key locations for nitrogen processing, which controls the supply of this limiting nutrient to the Arctic Ocean. In a warming Arctic, longer ice-free periods increase riverine productivity and modulate nitrogen consumption and delivery to the ocean. In this study, the annual variability of nitrate concentrations at the Lena River outlet (Samoylov station) was investigated. Significantly higher nitrate concentrations in water were observed sub-ice (winter) than in the open water (summer), and the higher nitrate concentrations follow phases of colder air temperature at the Lena catchment scale (ERA5 reanalysis data). We hypothesize that colder phases result in thicker river ice leading to darker under-ice conditions preferred by nitrifying microbial communities, thereby inducing increasing sub-ice nitrification. We tested this hypothesis using silicon isotopes known to fractionate upon freezing. The high nitrate concentrations in the winter are associated with heavier silicon isotope compositions in river water. This can be explained by the supersaturation and precipitation of amorphous silica preferentially incorporating the lighter silicon isotopes, leaving the water isotopically heavier. Supersaturation of amorphous silica can result from thicker ice formation upon colder air temperature at catchment scale. The silicon isotope data support phases of thicker ice formation, and indirectly support darker sub-ice conditions at the river base creating pulses of increasing nitrification. Our hypothesis is also supported by a change in the value of an index for dissolved organic carbon aromaticity (SUVA) during the colder phases: this suggests that conditions favour the decomposition of dissolved organic matter during periods of thicker river ice. Air temperature, nitrate concentration, silicon isotopes and SUVA are supporting evidence for pulses of sub-ice microbial activity in the river during winter. It follows that decreasing ice cover duration throughout the catchment is likely to decrease winter nitrate fluxes from the Lena River to the Arctic Ocean

What makes a face photo a 'good likeness'

Photographs of people are commonly said to be ‘good likenesses’ or ‘poor likenesses’, and this is a concept that we readily understand. Despite this, there has been no systematic investigation of what makes an image a good likeness, or of which cognitive processes are involved in making such a judgement. In three experiments, we investigate likeness judgements for different types of images: natural images of film stars (Experiment 1), images of film stars from specific films (Experiment 2), and iconic images and face averages (Experiment 3). In all three experiments, participants rated images for likeness and completed speeded name verification tasks. We consistently show that participants are faster to identify images which they have previously rated as a good likeness compared to a poor likeness. We also consistently show that the more familiar we are with someone, the higher likeness rating we give to all images of them. A key finding is that our perception of likeness is idiosyncratic (Experiments 1 and 2), and can be tied to our specific experience of each individual (Experiment 2). We argue that likeness judgements require a comparison between the stimulus and our own representation of the person, and that this representation differs according to our prior experience with that individual. This has theoretical implications for our understanding of how we represent familiar people, and practical implications for how we go about selecting images for identity purposes such as photo-ID

Widening of the genetic and clinical spectrum of Lamb-Shaffer syndrome, a neurodevelopmental disorder due to SOX5 haploinsufficiency

Purpose Lamb-Shaffer syndrome (LAMSHF) is a neurodevelopmental disorder described in just over two dozen patients with heterozygous genetic alterations involving SOX5, a gene encoding a transcription factor regulating cell fate and differentiation in neurogenesis and other discrete developmental processes. The genetic alterations described so far are mainly microdeletions. The present study was aimed at increasing our understanding of LAMSHF, its clinical and genetic spectrum, and the pathophysiological mechanisms involved. Methods Clinical and genetic data were collected through GeneMatcher and clinical or genetic networks for 41 novel patients harboring various types ofSOX5 alterations. Functional consequences of selected substitutions were investigated. Results Microdeletions and truncating variants occurred throughout SOX5. In contrast, most missense variants clustered in the pivotal SOX-specific high-mobility-group domain. The latter variants prevented SOX5 from binding DNA and promoting transactivation in vitro, whereas missense variants located outside the high-mobility-group domain did not. Clinical manifestations and severity varied among patients. No clear genotype-phenotype correlations were found, except that missense variants outside the high-mobility-group domain were generally better tolerated. Conclusions This study extends the clinical and genetic spectrum associated with LAMSHF and consolidates evidence that SOX5 haploinsufficiency leads to variable degrees of intellectual disability, language delay, and other clinical features

Preferential Riverine Export of Fine Volcanogenic Particles to the Southeast Australian Margin

We report on rare earth element and neodymium isotopic compositions in a series of grain-size fractions separated from river suspended matter in the Murray-Darling Basin (MDB) and a nearby marine sediment core (MD03-2607) offshore south-eastern Australia. This source-to-sink approach was used to further investigate the extent to which sediment sorting may control the geochemistry of suspended loads in rivers, and to provide constraints on the source of the detrital sediment material exported to the ocean. Our results provide further compelling evidence that significant size-dependent geochemical decoupling can occur in river systems, accounting here for Nd isotopic (εNd) differences of up to eight epsilon-units between silt (>25 μm) and colloidal (0.2−0.006 μm; 0.006−0.003 μm) fractions. All suspended particulate samples from the River Murray watershed display a trend toward more radiogenic (higher εNd) Nd signatures with decreasing grain-size, in addition to differing REE signatures, which collectively point toward a preferential volcanogenic origin for the fine-grained inorganic particles transported by MDB rivers. Furthermore, we show that the same river-borne volcanogenic material dominates in the fine-grained detrital fractions extracted from core MD03-2607 at the south-eastern Australian margin; a finding corroborated by REE signatures in a series of copepod fecal pellet separates from the same core. Collectively, our results suggest that river sediment discharge is accompanied by preferential export of fine-grained volcanogenic particles to the ocean. This potential source of bioavailable trace metals and nutrients in ocean surface waters could impact marine productivity.

Pulses of sub-ice microbial activity during winter: evidence from nitrate concentrations and silicon isotopes in the Lena River

Large Arctic rivers are key locations for nitrogen processing, which controls the supply of this limiting nutrient to the Arctic Ocean. In a warming Arctic, longer ice-free periods increase riverine productivity and modulate nitrogen consumption and delivery to the ocean. In this study, the annual variability of nitrate concentrations at the Lena River outlet (Samoylov station) was investigated. Significantly higher nitrate concentrations in water were observed sub-ice (winter) than in the open water (summer), and the higher nitrate concentrations follow phases of colder air temperature at the Lena catchment scale (ERA5 reanalysis data). We hypothesize that colder phases result in thicker river ice leading to darker under-ice conditions preferred by nitrifying microbial communities, thereby inducing increasing sub-ice nitrification. We tested this hypothesis using silicon isotopes known to fractionate upon freezing. The high nitrate concentrations in the winter are associated with heavier silicon isotope compositions in river water. This can be explained by the supersaturation and precipitation of amorphous silica preferentially incorporating the lighter silicon isotopes, leaving the water isotopically heavier. Supersaturation of amorphous silica can result from thicker ice formation upon colder air temperature at catchment scale. The silicon isotope data support phases of thicker ice formation, and indirectly support darker sub-ice conditions at the river base creating pulses of increasing nitrification. Our hypothesis is also supported by a change in the value of an index for dissolved organic carbon aromaticity (SUVA) during the colder phases: this suggests that conditions favour the decomposition of dissolved organic matter during periods of thicker river ice. Air temperature, nitrate concentration, silicon isotopes and SUVA are supporting evidence for pulses of sub-ice microbial activity in the river during winter. It follows that decreasing ice cover duration throughout the catchment is likely to decrease winter nitrate fluxes from the Lena River to the Arctic Ocean

Evidence from silicon isotopes for pulses of sub-ice microbial activity during winter in the Lena River

Large Arctic rivers are key locations for nitrogen processing, which controls the supply of this limiting nutrient to the Arctic Ocean. In a warming Arctic, longer ice-free periods increase riverine productivity and modulate nitrogen consumption and delivery to the ocean. In this study, the annual variability of nitrate concentrations at the Lena River outlet (Samoylov station) was investigated. Significantly higher nitrate concentrations in water were observed sub-ice (winter) than in the open water (summer), and the higher nitrate concentrations follow phases of colder air temperature at the Lena catchment scale (ERA5 reanalysis data). We hypothesize that colder phases result in thicker river ice leading to darker under-ice conditions preferred by nitrifying microbial communities, thereby inducing increasing sub-ice nitrification. We tested this hypothesis using silicon isotopes known to fractionate upon freezing. The high nitrate concentrations in the winter are associated with heavier silicon isotope compositions in river water. This can be explained by the supersaturation and precipitation of amorphous silica preferentially incorporating the lighter silicon isotopes, leaving the water isotopically heavier. Supersaturation of amorphous silica can result from thicker ice formation upon colder air temperature at catchment scale. The silicon isotope data support phases of thicker ice formation, and indirectly support darker sub-ice conditions at the river base creating pulses of increasing nitrification. Our hypothesis is also supported by a change in the value of an index for dissolved organic carbon aromaticity (SUVA) during the colder phases: this suggests that conditions favour the decomposition of dissolved organic matter during periods of thicker river ice. Air temperature, nitrate concentration, silicon isotopes and SUVA are supporting evidence for pulses of sub-ice microbial activity in the river during winter. It follows that decreasing ice cover duration throughout the catchment is likely to decrease winter nitrate fluxes from the Lena River to the Arctic Ocean

Rare earth elements in an intercropping cover crop to evaluate the trace element transfer from soil to plant

Transfer of trace elements, such as toxic metals, from soil to plant is a corner stone for risk assessment. Rare earth elements (REE) are frequently used as environmental tracers to understand biogeochemical processes in the soil–plant system. In this study, we combined trace element and REE measurements in the soil–plant continuum to evaluate the element transfer between different compartments. We specifically aimed at: (1) assessing the geochemical relevance and representativeness of intermediate compartments (soil solution and soil water-extract as a proxy of the bioavailable soil fraction) by comparing the REE normalized patterns; and (2) characterizing the environmental conditions that control the trace element transfer by quantifying the REE indices. For that purpose, we compared geochemical signatures in an intercropping cover crop (bean, Persian clover, and spelt) in Belgium, including soil, root, shoot, soil solution, soil water-extract, earthworm, and snow samples. Evaluation of the element mobility was performed using both soil extractability and transfer factors. The main result showed dissimilar REE patterns between soil/plant samples and soil solution/soil water-extract samples, indicating that the intermediate compartments (i.e., soil solutions or soil water-extracts) do not chemically represent the bioavailable fraction of elements without obvious propensity to biological accumulation (unlike Cd, Cu, or Zn). Compared to light REE, heavy REE were more extractable and thus transferred to plants unlike what is observed in the literature. According to their different extractabilities, Ce and Eu allowed to highlight distinct transfer from soil to plant due to possible adsorption or organic matter complexation that should be further confirmed by studying contrasted soils

Ustekinumab in bio-naïve and bio-failure Crohn's disease patients: Results from a « real-life » monocentric cohort.

peer reviewedBACKGROUND: The pivotal clinical trials have largely demonstrated the efficacy and safety of ustekinumab in Crohn's disease. Real-life cohorts published so far only include very few bio-naïve patients. This study assesses effectiveness and safety of ustekinumab in bio-naïve and bio-failure patients treated with ustekinumab in routine practice and look for predictors of response. METHODS: We performed a retrospective monocentric study. Initial response was assessed by maintenance therapy beyond week 16. Sustained response was assessed by the continuation or cessation of therapy over time for another reason than stopping in sustained remission. Treatment persistence was assessed by Kaplan Meier curves and predictors of treatment persistence were studied by univariate and multivariate Cox model. RESULTS: Out of 156 recorded patients, three patients were still in their induction phase at time of analysis and 5 patients were lost to follow-up, leaving 148 patients for clinical effectiveness analyses, including 35 bio-naïve when starting ustekinumab. A maintenance therapy was initiated in 79.7%. At one year, the probability to be still treated with ustekinumab was 73.8%. Treatment cessation increased with smoking in multivariate analysis. Previous biologic failure (as a whole), CRP and fecal calprotectin baseline levels did not influence initial response and treatment persistence. CONCLUSION: A large proportion of CD patients initially respond to ustekinumab and continue this treatment beyond one year. Treatment persistence is as high in bio-failure as in bio-naïve patients

The roles of climate and human land-use in the late Holocene rainforest crisis of Central Africa

There is increasing evidence that abrupt vegetation shifts and large-scale erosive phases occurred in Central Africa during the third millennium before present. Debate exists as to whether these events were caused by climate change and/or intensifying human activities related to the Bantu expansion. In this study, we report on a multi-proxy investigation of a sediment core (KZR-23) recovered from the Congo submarine canyon. Our aim was to reconstruct climate, erosion and vegetation patterns in the Congo Basin for the last 10,000 yrs, with a particular emphasis on the late Holocene period. Samples of modern riverine suspended particulates were also analyzed to characterize sediment source geochemical signatures from across the Congo watershed. We find that a sudden increase of bulk sediment aluminium-to-potassium (Al/K) ratios and initial radiocarbon ages of bulk organic matter occurred after 2,200 yrs ago, coincident with a pollen-inferred vegetation change suggesting forest retreat and development of savannas. Although hydrogen isotope compositions of plant waxes (δDwax) do not reveal a substantial hydroclimate shift during this period, neodymium isotopes and rare earth elements in detrital fractions indicate provenance changes for the sediment exported from the Congo Basin at that time, hence suggesting a reorganization of spatial rainfall patterns across Central Africa during this event. Taken together, these findings provide evidence for changing landscapes in Central Africa from about 2,200 yrs ago, associated with synchronous events of vegetation changes and enhanced erosion of pre-aged and highly weathered soils. These events coincided remarkably well with the arrival of Iron Age communities into the rainforest, as inferred from comparison to regional archaeological syntheses. While the human impact on the environment remains difficult to quantify at the scale of the vast Congo Basin, we tentatively propose that strengthening of El Niño-Southern Oscillation (ENSO) variability at that time played a key role in triggering the observed environmental changes, and possibly acted as a driver for the eastward migration of Bantu-speaking peoples across Central Africa.AFRIVA