L'Auto-vélo : automobilisme, cyclisme, athlétisme, yachting, aérostation, escrime, hippisme / dir. Henri Desgranges

12 juin 19371937/06/12 (A38,N13324)

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina-13

<p><b>Copyright information:</b></p><p>Taken from "Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina"</p><p>http://www.biomedcentral.com/1471-2164/8/325</p><p>BMC Genomics 2007;8():325-325.</p><p>Published online 17 Sep 2007</p><p>PMCID:PMC2045113.</p><p></p>c ORF redundancy (y-axis) versus the size of the genome in ORFs (x-axis) for each species. See Figure 2 for further details

L'Auto-vélo : automobilisme, cyclisme, athlétisme, yachting, aérostation, escrime, hippisme / dir. Henri Desgranges

14 juillet 19291929/07/14 (A30,N10438)

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina-4

<p><b>Copyright information:</b></p><p>Taken from "Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina"</p><p>http://www.biomedcentral.com/1471-2164/8/325</p><p>BMC Genomics 2007;8():325-325.</p><p>Published online 17 Sep 2007</p><p>PMCID:PMC2045113.</p><p></p>the number of ORFs shown by clusters (rows) and by species (columns). Both rows and columns are ordered by hierarchical clustering to group similar rows or columns together. The dendrogram from hierarchical clustering is shown for columns and the phylum of species is indicated by a column colour bar between the heatmap and the dendrogram. Under the heatmap each species is specified by an abbreviation explained in Table 1. On the left side of the main heatmap a black and white side heatmap shows the percentage of ORFs in a cluster that have an InterPro entry of all cluster's ORFs analysed with InterProScan ("wIPR"), cluster's stability and cluster's Saccharomycotina to Pezizomycotina ratio in a clustering where inflation value () was 1.1 ("S/P r 1.1"). Stability reflects the ratio of cluster size between a clustering where = 3.1 to that where = 1.1. As Figure 1 shows, when is set to its minimum value (1.1), TRIBE-MCL clustering produces a minimum amount of clusters and orphan clusters. In consequence the clusters are on average larger when = 1.1. The ratio between cluster size = 3.1 and = 1.1 is shown as a percentage. "S/P 1.1" reflects the ratio of count of Saccharomycotina ORFs to Pezizomycotina ORFs in a cluster when = 1.1. By comparing "S/P 1.1" to the species distribution of a cluster shown on the main heatmap one can see if a cluster retains the Saccharomycotina to Pezizomycotina ratio when = 1.1. On the right side of the main heatmap, a side heatmap shows various functional classifications for the clusters. Whether or not the cluster has a Funcat classification ("Funcat") or has an ORF found in metabolic model iMH805 is shown ("iMH805"). Whether the proteins in the cluster are predicted by Protfun to have a signal sequence directing them into either mitochondrion or secretion pathway ("TargetP"), have transmembrane domains ("TMHMM") or are predicted to be enzymes is shown ("Enz."). Clusters belonging to regions A: "Pezizomycotina abundant", B: "Pezizomycotina specific", C: "Saccharomycotina absent" and D: "Saccharomycotina unique" are specified by a vertical bar between main and right heatmap

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina-0

<p><b>Copyright information:</b></p><p>Taken from "Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina"</p><p>http://www.biomedcentral.com/1471-2164/8/325</p><p>BMC Genomics 2007;8():325-325.</p><p>Published online 17 Sep 2007</p><p>PMCID:PMC2045113.</p><p></p>lusters i.e. clusters with only a single member ORF (right y-axis) for clusterings made with different inflation values (x-axis)

[unknown]

原著和名: [記載なし]科名: ナス科 = Solanaceae採集地:採集日:採集者: 鴻海左九三整理番号: JH046360国立科学博物館整理番号: []備考: DB作成協力会による補足あ

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina-8

<p><b>Copyright information:</b></p><p>Taken from "Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina"</p><p>http://www.biomedcentral.com/1471-2164/8/325</p><p>BMC Genomics 2007;8():325-325.</p><p>Published online 17 Sep 2007</p><p>PMCID:PMC2045113.</p><p></p

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina-2

<p><b>Copyright information:</b></p><p>Taken from "Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina"</p><p>http://www.biomedcentral.com/1471-2164/8/325</p><p>BMC Genomics 2007;8():325-325.</p><p>Published online 17 Sep 2007</p><p>PMCID:PMC2045113.</p><p></p>ic ORF redundancy (y-axis) versus the size of the genome in ORFs (x-axis) for each species. See Figure 2 for further details

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina-5

<p><b>Copyright information:</b></p><p>Taken from "Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina"</p><p>http://www.biomedcentral.com/1471-2164/8/325</p><p>BMC Genomics 2007;8():325-325.</p><p>Published online 17 Sep 2007</p><p>PMCID:PMC2045113.</p><p></p>zymes found in clusters corresponding to Funcat categories 01.01.11.02 -01.01.11.04 enriched in the region C: "Saccharomycotina absent" in Table 3 are filled with

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina-6

<p><b>Copyright information:</b></p><p>Taken from "Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina"</p><p>http://www.biomedcentral.com/1471-2164/8/325</p><p>BMC Genomics 2007;8():325-325.</p><p>Published online 17 Sep 2007</p><p>PMCID:PMC2045113.</p><p></p>ariation in the counts of ORFs with an InterPro entry. Species abbreviations are explained in Table 1 and data points are coloured by phyla