Modeling clinical states and metabolic rhythms in bioarcheology

Bioarcheology is cross disciplinary research encompassing the study of human remains. However, life’s activities have, up till now, eluded bioarcheological investigation. We hypothesized that growth lines in hair might archive the biologic rhythms, growth rate, and metabolism during life. Computational modeling predicted the physical appearance, derived from hair growth rate, biologic rhythms, and mental state for human remains from the Roman period. The width of repeat growth intervals (RI’s) on the hair, shown by confocal microscopy, allowed computation of time series of periodicities of the RI’s to model growth rates of the hairs. Our results are based on four hairs from controls yielding 212 data points and the RI’s of six cropped hairs from Zweeloo woman’s scalp yielding 504 data points. Hair growth was, ten times faster than normal consistent with hypertrichosis. Cantú syndrome consists of hypertrichosis, dyschondrosteosis, short stature, and cardiomegaly. Sympathetic activation and enhanced metabolic state suggesting arousal was also present. Two-photon microscopy visualized preserved portions of autonomic nerve fibers surrounding the hair bulb. Scanning electron microscopy found evidence that a knife was used to cut the hair three to five days before death. Thus computational modeling enabled the elucidation of life’s activities 2000 years after death in this individual with Cantu syndrome. This may have implications for archeology and forensic sciences

Evidence for Microbial Involvement in Pool Finger Precipitation, Hidden Cave, New Mexico

Although speleothems are usually considered inorganic precipitates, recent work has demonstrated hitherto unsuspected biogenic influence in some twilight areas. We have expanded this notion to the dark zone, examining pool fingers from Hidden Cave, New Mexico, to test for possible bacterial involvement. The pool fingers in Hidden Cave are pendant speleothems that formed subaqueously in paleo-pools. They are 1 to 4 cm in diameter and 5 to 50 cm long. A knobby, irregular external shape is underlaid by a layered interior on two scales, a 0.5 to 1.0 cm alternation between dense and porous layers and a mm-scale alternation between dark micritic calcite and clear dogtooth spar. The micrite is similar to microbialites identified in modern and ancient carbonates. Fossil bacteria were found in all layers. These include (1) calcified filaments 1 w m in diameter and 5–50 w m long and (2) micro-rods 0.1 w m by 1–2 w m. Most filaments are curved rods with a smooth surface but rare examples display a diamond crosshatch surface. The micro-rods occur as isolated crystals to dense meshes. We interpret the micro-rods as calcified bacilliform bacteria and the filaments as calcified filamentous bacteria. Carbon isotopic data are slightly more negative (by - 0.5 to - 1.0% in micritic layers than in dogtooth spar layers, suggesting a greater microbial influence in the micritic layers. Based on these similarities to known microbialites (e.g., petrographic fabrics, the presence of fossil bacteria, and the suggestive carbon isotopic data), we conclude that microbial activity was an intimate part of pool finger formation in Hidden Cave. The significance of such involvement goes beyond speleological contexts to wider questions of identification of biosignatures in rocks on earth and beyond

Activities and Ultrastructural Effects of Antifungal Combinations against Simulated Candida Endocardial Vegetations ▿

In vitro pharmacodynamic model (PDM) simulation of serum antifungal concentrations may predict the value of combination antifungal regimens against Candida sp. endocarditis. We investigated the effects of combinations of flucytosine (5FC), micafungin (Mica), and voriconazole (Vor) against Candida-infected human platelet-fibrin clots, used as simulated endocardial vegetations (SEVs). Single clinical bloodstream isolates of Candida albicans, Candida glabrata, Candida parapsilosis, and Candida tropicalis were used. All four isolates were susceptible to 5FC, while C. glabrata was resistant to Vor and C. tropicalis had a paradoxical resistance phenotype to Mica. The SEVs were prepared with an initial inoculum of 1 × 106 CFU/g of SEV and added to a PDM, which utilized yeast nitrogen broth-2% glucose and incubation at 35°C and simulated antifungal pharmacokinetic profiles. Fungal densities in the SEVs were determined in quadruplicate over 72 h. Scanning electron microscopy (SEM) was used to evaluate treatment and control SEVs. Vor was the least active single agent against all Candida spp. except for C. parapsilosis, where it was comparable to Mica. In contrast, 5FC was the most active against all Candida spp. except for C. tropicalis, where it was comparable to Mica. The combination of 5FC plus Vor was superior to either agent alone against C. parapsilosis. The combination of Vor plus Mica was inferior to the use of Mica alone against C. tropicalis. The triple combination of 5FC plus Vor plus Mica was no better than single or dual agents against any of the Candida spp. The ultrastructural features of infected SEVs were unique for each Candida sp., with C. parapsilosis in particular manifesting friable biofilm clusters. In general, 5FC and Mica were superior in their rates and extents of fungal burden reduction compared to Vor against Candida-infected SEVs. Evaluation of 5FC and Mica in animal models of Candida endocarditis is warranted

Methods to analyze metastable and microparticulate hydrated and hydrous iron sulfate minerals

We evaluate analytical methods for characterizing hydrated and hydrous iron sulfate minerals (HHIS) that are typically metastable in air or vacuum, commonly form micrometer-sized particles, and contain multi-valent and light elements (Fe2+, Fe3+, OH-, and H2O) that may be challenging to quantify. We synthesized or obtained HHIS-szomolnokite, melanterite, rhomboclase, schwertmannite, ferricopiapite, paracoquimbite, and jarosite-as well as Fe-oxides. These nominally pure samples were characterized with X-ray diffraction (XRD), and then used to evaluate bulk analyses obtained from combined inductively coupled plasma, optical emission spectroscopy (ICP-OES), ion chromatography (IC), Mössbauer spectroscopy, and mass spectrometry. Integrated bulk analyses showed excellent agreement with the nominal formulas for the minerals. Because HHIS commonly form micro-sized particles-for example, HHIS found in acid mine drainage (AMD) environments and in martian meteorites-it is necessary to develop micro-analytical techniques. Microscopic mid-infrared spectroscopy allows the analyst to successfully discriminate among HHIS with minimal sample preparation on the small scale (̃40 × 40 μm). For chemical analysis, electron probe microanalysis (EPMA) is preferred for samples that can be mounted, polished, coated, and that are stable under high vacuum; however, few HHIS meet those criteria. To characterize HHIS compositions, we show that multiple low-vacuum scanning electron microscopy (SEM) analyses of the same uncoated, unpolished mineral are required. Analysis of each mineral shows linear trends on ternary diagrams of 5×Fe-SO4-O (where oxygen is in O, OH, and H2O) that may be used to narrow down the HHIS mineralogy. Low-vacuum SEM also provides invaluable information about the geochemical and textural context of the samples. Our study provides protocols for microanalysis of these challenging, fine-grained, and metastable HHIS that may also be applied to other mineral groups

Descubriendo la riqueza de las Cuevas: La Cueva de Villa Luz, en Tabasco

Sabías que…La Cueva de Villa Luz es famosa por su singular ambiente, rico en compuestos de azufre. Esta cueva se encuentra entre las más peligrosas para los humanos, ya que en su interior hay grandes concentraciones de gas sulfhídrico, muy tóxico, que le da a la cueva el típico olor a huevo podrido. La Villa Luz es el típico ejemplo de una cueva cuyo desarrollo y crecimiento se encuentran aún activos, debido a la acción del ácido sulfúrico. Este ácido es generado por el desecho metabólico de las colonias de bacterias, que obtienen sulfuro de hidrógeno de las rocas. El ácido sulfúrico es un elemento natural que interviene en varios procesos biogeoquímicos responsables de la formación de la cuev

CO\u3csub\u3e2\u3c/sub\u3e hypogene speleogenesis in an endogenic travertine system, Mesa del Oro, New Mexico, USA

The Mesa del Oro travertine, deposited by upwelling CO2-rich spring waters, is a large and thick mantle of calcite overlying soft Triassic Chinle Formation mudstones in western central New Mexico, USA. The travertine contains a system of small caves known as the Pronoun Cave Complex. Whut Cave is the largest known cave in the complex. While the travertine hydrologic system is no longer active, there is ample evidence that Whut Cave was formed by hypogene speleogenesis. The Whut Cave entrance is a small roughly circular shaft that descends ~four meters and intersects a linear fissure-controlled passage. Mn-oxide was once mined below the entrance, leaving a five-meter-deep pit that represents the path of upwelling waters that were likely charged with CO2 and supersaturated with CaCO3 once reaching the surface. The roomiest part of the cave is immediately adjacent to the entrance, defining where most of the upwelling of groundwater and gases took place. Gypsum and other sulfates were only noted microscopically. A sample of travertine at the surface near the entrance yielded a uranium-series age beyond the limit of the method and a δ234U age of 735 ± 109 ka BP (before present). A piece of breccia vein in the mine dump associated with the Mn-oxide ore, and a rill of a drape-like crust on the cave wall, both interpreted to be products of hypogene speleogenesis and representing the oldest speleogenetic material, yielded δ234U ages of 848 ± 110 and 723 ± 109 ka BP. Altogether, materials interpreted to be speleogenetic yielded ages of ~900 – 300 ka BP. Although the cave is dry and hydrologically inactive today, cave development by CO2 hypogene speleogenesis was coeval with endogenic travertine deposition and nearby volcanism. Our interpretation suggests that all these events are linked

Geomicrobiology of Cave Ferromanganese Deposits: A Field and Laboratory Investigation

Unusual ferromanganese deposits are found in several caves in New Mexico. The deposits are enriched in iron and manganese by as much as three orders of magnitude over the bedrock, differing significantly in mineralogy and chemistry from bedrock-derived insoluble residue. The deposits contain metabolically active microbial communities. Enrichment cultures inoculated from the ferromanganese deposits produced manganese oxides that were initially amorphous but developed into crystalline minerals over an 8-month period and beyond; no such progression occurred in killed controls. Phylogenetic analyses of sequences from clone libraries constructed from culture DNA identified two genera known to oxidize manganese, but most clones represent previously unknown manganese oxidizers. We suggest that this community is breaking down the bedrock and accumulating iron and manganese oxides in an oligotrophic environment

Diverse microbial communities inhabiting ferromanganese deposits in Lechuguilla and Spider Caves

Lechuguilla Cave is an ancient, deep, oligotrophic subterranean environment that contains an abundance of low‐density ferromanganese deposits, the origin of which is uncertain. To assess the possibility that biotic factors may be involved in the production of these deposits and to investigate the nature of the microbial community in these materials, we carried out culture‐independent, small subunit ribosomal RNA (SSU rRNA) sequence‐based studies from two sites and from manganese and iron enrichment cultures inoculated with ferromanganese deposits from Lechuguilla and Spider Caves. Sequence analysis showed the presence of some organisms whose closest relatives are known iron‐ and manganese‐oxidizing/reducing bacteria, including Hyphomicrobium, Pedomicrobium, Leptospirillum, Stenotrophomonas and Pantoea. The dominant clone types in one site grouped with mesophilic Archaea in both the Crenarchaeota and Euryarchaeota. The second site was dominated almost entirely by lactobacilli. Other clone sequences were most closely related to those of nitrite‐oxidizing bacteria, nitrogen‐fixing bacteria, actinomycetes and β‐ and γ‐Proteobacteria. Geochemical analyses showed a fourfold enrichment of oxidized iron and manganese from bedrock to darkest ferromanganese deposits. These data support our hypothesis that microorganisms may contribute to the formation of manganese and iron oxide‐rich deposits and a diverse microbial community is present in these unusual secondary mineral formations