Multiple sequence alignment of Pseudomonas aeruginosa isolates

Multiple sequence alignment of Pseudomonas aeruginosa Liverpool Epidemic Strain isolates sampling separate populations from two chronically infected cystic fibrosis patients in Phylip format compressed as a gzip file. The reference sequence LESB58 (NC_011770) is included against which variants were called against aligned short reads

BAGA genome analysis pipeline for recombination

<p>Script to run a comparative genomics analysis pipeline using the Bacterial and Archaeal Genome Analyser. This analysis infers homologous recombination rates in two sets of samples of Pseudomonas aeruginosa from cystic fibrosis chromic airway infection sputum samples. This script succesfully completed on a Debian Linux computer with 12GB memory and 100sGB disk space. If you have trouble using baga raise an issue at https://github.com/daveuu/baga or email: [email protected]. The VCFs and multiple sequence alignments produced are available at DOIs: 10.6084/m9.figshare.1521307 and 10.6084/m9.figshare.1521131</p

Resource supply and the evolution of public-goods cooperation in bacteria-5

Mpetition in shaken microcosms where the WS phenotype is purely costly due to the prevention of biofilm formation. These data show that the fitness of the cooperative WS phenotype relative to the SM phenotype increases with increasing resource supply.<p><b>Copyright information:</b></p><p>Taken from "Resource supply and the evolution of public-goods cooperation in bacteria"</p><p>http://www.biomedcentral.com/1741-7007/6/20</p><p>BMC Biology 2008;6():20-20.</p><p>Published online 14 May 2008</p><p>PMCID:PMC2409295.</p><p></p

Resource supply and the evolution of public-goods cooperation in bacteria-1

Mpetition in shaken microcosms where the WS phenotype is purely costly due to the prevention of biofilm formation. These data show that the fitness of the cooperative WS phenotype relative to the SM phenotype increases with increasing resource supply.<p><b>Copyright information:</b></p><p>Taken from "Resource supply and the evolution of public-goods cooperation in bacteria"</p><p>http://www.biomedcentral.com/1741-7007/6/20</p><p>BMC Biology 2008;6():20-20.</p><p>Published online 14 May 2008</p><p>PMCID:PMC2409295.</p><p></p

Variants called for 62 isolates against two Pseudomonas aeruginosa genomes

The variants used in the subsequent analyses were called aginst LESB58 (NC_011770.1). The variants called against LESlike7 (NZ_CP006981.1) were used to confirm false positive variant calls around the LES Prophage 5 insertion site in LESB58. LES Prophage 5 is absent in LESlike7

Resource supply and the evolution of public-goods cooperation in bacteria-6

M colony morphology (i.e., biofilm SM density/[biofilm SM density + WS density]). These data show that selection for biofilm-dwelling SM, rather than SM , peaked at intermediate resource supply.<p><b>Copyright information:</b></p><p>Taken from "Resource supply and the evolution of public-goods cooperation in bacteria"</p><p>http://www.biomedcentral.com/1741-7007/6/20</p><p>BMC Biology 2008;6():20-20.</p><p>Published online 14 May 2008</p><p>PMCID:PMC2409295.</p><p></p

Resource supply and the evolution of public-goods cooperation in bacteria-0

WS (i.e., density WS/total density) on day 16 of the experiment. These data show that the proportion of cooperative WS increases with increasing resource supply.<p><b>Copyright information:</b></p><p>Taken from "Resource supply and the evolution of public-goods cooperation in bacteria"</p><p>http://www.biomedcentral.com/1741-7007/6/20</p><p>BMC Biology 2008;6():20-20.</p><p>Published online 14 May 2008</p><p>PMCID:PMC2409295.</p><p></p

Multiple sequence alignment of P. aeruginosa isolates (draft)

<p>Multiple sequence alignment of Pseudomonas aeruginosa Liverpool Epidemic Strain isolates sampling separate populations from two chronically infected cystic fibrosis patients in Phylip format compressed as a gzip file.</p

Resource supply and the evolution of public-goods cooperation in bacteria-3

-producers after 24 hours of competition. These data show that the fitness of cooperative siderophore producers relative to non-producing cheats increases with increasing resource supply.<p><b>Copyright information:</b></p><p>Taken from "Resource supply and the evolution of public-goods cooperation in bacteria"</p><p>http://www.biomedcentral.com/1741-7007/6/20</p><p>BMC Biology 2008;6():20-20.</p><p>Published online 14 May 2008</p><p>PMCID:PMC2409295.</p><p></p

Variants called for 62 isolates against two genomes (draft)

<p>The variants used in the subsequent analyses were called aginst LESB58 (FM206186.1). The variants called against LESlike7 (CP006981.1) were used to confirm false positive variant calls around the LES Prophage 5 insertion site in LESB58. LES Prophage 5 is absent in LESlike7.</p