Chemical control of ufra disease of rice: a simple profitability analysis

Multiple field trials were conducted to determine the efficacy of Furataf 5G, Arodhan 5G and Biestern 5G @ 1.0 kg a.i/ha with standard check, Furadan 5G in two ecosystems and three seasons viz. November to April irrigated ecosystem (Boro), April to July (Transplanted Aus) and July to October (Transplanted Aman) rain-fed lowland ecosystems during 1995 to 1997. All the test chemicals are effective to control the ufra disease of rice and increased yield in comparison with Furadan 5G. In respect of all seasons, Furataf 5G, Arodhan 5G, Biestern 5G increased yield recovery 2.29- 4.15, 2.59-3.40 and 3.06-3.86 t/ha in three rice genotypes respectively, which was more or loss similar to Furadan 5G (3.09-3.65 t/ha). Yield reduces due to ufra disease was 79.48% in T. Aman, while it was 93.88% and 89.11% in T. Aus and Boro rice. Application of Furataf 5G, Arodhan 5G, Biestern 5G and Furadan 5G showed 14.44-15.74, 10.09-14.31 and 12.45 -14.92 times profitable in case of T. Aus, T. Aman and Boro respectively over the control (Diseased). Simple economic analysis also revealed that ufra control with the use of three chemicals in soil treatments is profitable. Thus three chemicals may also be used as alternative to Furadan 5G

Molecular markers: a potential resource for ginger genetic diversity studies

Ginger is an economically important and valuable plant around the world. Ginger is used as a food, spice, condiment, medicine and ornament. There is available information on biochemical aspects of ginger, but few studies have been reported on its molecular aspects. The main objective of this review is to accumulate the available molecular marker information and its application in diverse ginger studies. This review article was prepared by combing material from published articles and our own research. Molecular markers allow the identification and characterization of plant genotypes through direct access to hereditary material. In crop species, molecular markers are applied in different aspects and are useful in breeding programs. In ginger, molecular markers are commonly used to identify genetic variation and classify the relatedness among varieties, accessions, and species. Consequently, it provides important input in determining resourceful management strategies for ginger improvement programs. Alternatively, a molecular marker could function as a harmonizing tool for documenting species. This review highlights the application of molecular markers (isozyme, RAPD, AFLP, SSR, ISSR and others such as RFLP, SCAR, NBS and SNP) in genetic diversity studies of ginger species. Some insights on the advantages of the markers are discussed. The detection of genetic variation among promising cultivars of ginger has significance for ginger improvement programs. This update of recent literature will help researchers and students select the appropriate molecular markers for ginger-related research

Development of advanced fragrant rice lines from MR269 × Basmati 370 through marker-assisted backcrossing

Fragrance in rice is an appealing attribute to consumers. The increasing demand for fragrant rice highlights the need to develop fragrant rice variety that suit the preference of local consumers in addition to reduce fragrant rice imports. Marker-assisted backcrossing (MABC) was employed to develop advanced fragrant rice lines from the cross between MR269 and Basmati 370. MR269 is a Malaysian high-yielding rice variety but non-fragrant and was used as recurrent parent whereas Basmati 370 is a well-known fragrant traditional rice variety and was used as donor parent for the fragrance gene. Two generations of backcrosses and a generation of selfing were conducted to introgress the fragrance gene and restore the recurrent parent genome in the backcross progenies. As a result, 14 advanced fragrant rice lines were developed. These advanced fragrant rice lines carried homozygous alleles for the fragrance gene, similar to Basmati 370. The average recovery of recurrent parent genome was 88.4%. Besides being fragrant, the advanced fragrant rice lines also had most of the morphological and agronomical traits similar to MR269. Grain quality of the advanced fragrant rice lines in terms of gelatinization temperature, amylose content and gel consistency are also similar to both parents. Besides, the advanced fragrant rice lines had 2-acetyl-1-pyrroline content similar to Basmati 370. MABC approach applied in this study has successfully introgressed the fragrance gene and accelerated the recovery of recurrent parent genome in advanced fragrant rice lines, therefore these lines can be delivered to the farmers and consumers for use in due time

Goat Genomic Resources: The Search for Genes Associated with Its Economic Traits

Goat plays a crucial role in human livelihoods, being a major source of meat, milk, fiber, and hides, particularly under adverse climatic conditions. The goat genomics related to the candidate gene approach is now being used to recognize molecular mechanisms that have different expressions of growth, reproductive, milk, wool, and disease resistance. The appropriate literature on this topic has been reviewed in this article. Several genetic characterization attempts of different goats have reported the existence of genotypic and morphological variations between different goat populations. As a result, different whole-genome sequences along with annotated gene sequences, gene function, and other genomic information of different goats are available in different databases. The main objective of this review is to search the genes associated with economic traits in goats. More than 271 candidate genes have been discovered in goats. Candidate genes influence the physiological pathway, metabolism, and expression of phenotypes. These genes have different functions on economically important traits. Some genes have pleiotropic effect for expression of phenotypic traits. Hence, recognizing candidate genes and their mutations that cause variations in gene expression and phenotype of an economic trait can help breeders look for genetic markers for specific economic traits. The availability of reference whole-genome assembly of goats, annotated genes, and transcriptomics makes comparative genomics a useful tool for systemic genetic upgradation. Identification and characterization of trait-associated sequence variations and gene will provide powerful means to give positive influences for future goat breeding program

Breeding for Anthracnose disease resistance in chili: progress and prospects

Chili anthracnose is one of the most devastating fungal diseases affecting the quality and yield production of chili. The aim of this review is to summarize the current knowledge concerning the chili anthracnose disease, as well as to explore the use of marker-assisted breeding programs aimed at improving anthracnose disease resistance in this species. This disease is caused by the Colletotrichum species complex, and there have been ongoing screening methods of chili pepper genotypes with resistance to anthracnose in the field, as well as in laboratories. Conventional breeding involves phenotypic selection in the field, and it is more time-consuming compared to molecular breeding. The use of marker-assisted selection (MAS) on the basis of inheritance, the segregation ratio of resistance to susceptibility, and the gene-controlling resistance may contribute to the development of an improved chili variety and speed up the selection process, while also reducing genetic drag in the segregating population. More importantly, by using molecular markers, the linkage groups are determined dominantly and co-dominantly, meaning that the implementation of a reliable method to produce resistant varieties is crucial in future breeding programs. This updated information will offer a supportive direction for chili breeders to develop an anthracnose-resistant chili variety

Genotype × Environment interaction and stability analyses of yield and yield components of established and mutant rice genotypes tested in multiple locations in Malaysia

Genotypes evaluation for stability and high yielding in rice is an important factor for sustainable rice production and food security. These evaluations are essential especially when the objective of the breeding program is to select lines with high adaptability and stability. This study was conducted to investigate G × E interaction over ten environments across the peninsular Malaysia for yield stability in fifteen rice genotypes comprising twelve mutant lines and three established varieties. The experiment was laid out in a randomized complete block design with three replications across the environments. Yield component traits were evaluated over multiple harvests and measured as number of tillers per hill, filled grains per panicle, grain weight per hill and yield per hectare. Data analyses were through analyses of variance and stability analyses were conducted for univariate and multivariate stability parameters. The pooled analysis of variance showed highly significant differences among genotypes, locations, seasons, and genotypes by environment (G × E interaction) for all the traits. Based on univariate (bi, , σi2, Wi2, YSi) and multivariate (AMMI and GGE biplot) stability parameters, rice genotypes were classified into three main groups. The first group are genotypes having high stability along with high yield. These genotypes are widely adapted to diverse environmental conditions. The second group is a genotype that exhibited high yield but low stability, this genotype is suitable for specific environments. The last group is genotypes with low yield and high stability. Genotypes in this class are more suitable for breeding specific traits or yield component compensation such as the capacity to recover rapidly from stresses. Significant rank correlations were measured for regression slope (bi), deviation from regression (), Shukla stability variance (), Wricke’s ecovalence (), and Kang stability statistic (YSi) for all the traits

Marker-assisted introgression of broad-spectrum blast resistance genes into the cultivated MR219 rice variety

Background: The rice cultivar MR219 is famous for its better yield and long and fine grain quality; however, it is susceptible to blast disease. The main objective of this study was to introgress blast resistance genes into MR219 through marker-assisted selection (MAS). The rice cultivar MR219 was used as the recurrent parent, and Pongsu Seribu 1 was used as the donor. Results: Marker-assisted foreground selection was performed using RM6836 and RM8225 to identify plants possessing blast resistance genes. Seventy microsatellite markers were used to estimate recurrent parent genome (RPG) recovery. Our analysis led to the development of 13 improved blast resistant lines with Piz, Pi2 and Pi9 broad-spectrum blast resistance genes and an MR219 genetic background. The RPG recovery of the selected improved lines was up to 97.70% with an average value of 95.98%. Selected improved lines showed a resistance response against the most virulent blast pathogen pathotype, P7.2. The selected improved lines did not express any negative effect on agronomic traits in comparison with MR219. Conclusion: The research findings of this study will be a conducive approach for the application of different molecular techniques that may result in accelerating the development of new disease-resistant rice varieties, which in turn will match rising demand and food security worldwide. © 2016 Society of Chemical Industry

A novel method for the synthesis of calcium carbonate (aragonite) nanoparticles from cockle shells

We report a simple, novel and low-cost method for the synthesis of aragonite nanoparticles from cockle shells. Aragonite is one of the least abundant biogenic polymorphs of calcium carbonate and is widely used as a biomaterial for the repair of fractured bone, development of advanced drug delivery systems, and tissue scaffolds. The method involves a simple mechanical grinding of the micron-sized cockle shell powders in the presence of a non-toxic and non-hazardous biomineralization catalyst, dodecyl dimethyl betaine (BS-12). The method produces rod-shaped aragonite particles with a diameter of 20 ± 5 nm with good reproducibility and without any additional impurities. This was confirmed by a combined analysis of variable pressure scanning electron microscopy (VPSEM), transmission electron microscopy (TEM), Fourier transmission infrared spectroscopy (FTIR), thermogravimetric analyzer (TGA), X-ray diffraction spectroscopy (XRD) and energy dispersive X-ray analyser (EDX). The method should find potential applications in industry for the large scale synthesis of aragonite nanoparticles from a low cost but abundant natural resource such as cockle shells

Development of anthracnose disease resistance and heat tolerance chili through conventional breeding and molecular approaches: a review

Chili (Capsicum annuum L.) is the popular spicy vegetable crops belonging to family Solanaceae. Chili peppers are known for their pungency characteristic due to the presence of capsaicinoids that classifies them into hot or sweet pepper. Chili is used as spices, folk remedies for diseases, vegetables, and coloring agent showing a diverse role in human’s life. However, its production is hampered by different biotic stress and abiotic factors. Similarly, the unavailability of high yielding varieties, high temperature, and disease incidence, particularly, anthracnose disease, are the major constraints responsible for the low production of chili pepper. The advents of molecular markers, advancement in quantitative trait loci by classical genetic analysis, and conventional breeding have shown the number of genes for many important and major traits. While the newly developed genotyping technologies and next generation sequencing have led to the discovery of molecular basis for economic important characters in the chili genome and generate large scale data for genomic resources. Based on this background, this review summarizes progress in the development of anthracnose disease-resistant and heat-tolerant chili genotypes through conventional breeding and molecular approaches. This review would help plant breeders in understanding the phenotypic and genetic make-up of capsicum genotypes and provides opportunities for pyramiding two respected genes with the help of diversified phenotypic and molecular marker evaluation

Blast resistance in rice: a review of conventional breeding to molecular approaches

Blast disease caused by the fungal pathogen Magnaporthe oryzae is the most severe diseases of rice. Using classical plant breeding techniques, breeders have developed a number of blast resistant cultivars adapted to different rice growing regions worldwide. However, the rice industry remains threatened by blast disease due to the instability of blast fungus. Recent advances in rice genomics provide additional tools for plant breeders to improve rice production systems that would be environmentally friendly. This article outlines the application of conventional breeding, tissue culture and DNA-based markers that are used for accelerating the development of blast resistant rice cultivars. The best way for controlling the disease is to incorporate both qualitative and quantitative genes in resistant variety. Through conventional and molecular breeding many blast-resistant varieties have been developed. Conventional breeding for disease resistance is tedious, time consuming and mostly dependent on environment as compare to molecular breeding particularly marker assisted selection, which is easier, highly efficient and precise. For effective management of blast disease, breeding work should be focused on utilizing the broad spectrum of resistance genes and pyramiding genes and quantitative trait loci. Marker assisted selection provides potential solution to some of the problems that conventional breeding cannot resolve. In recent years, blast resistant genes have introgressed into Luhui 17, G46B, Zhenshan 97B, Jin 23B, CO39, IR50, Pusa1602 and Pusa1603 lines through marker assisted selection. Introduction of exotic genes for resistance induced the occurrence of new races of blast fungus, therefore breeding work should be concentrated in local resistance genes. This review focuses on the conventional breeding to the latest molecular progress in blast disease resistance in rice. This update information will be helpful guidance for rice breeders to develop durable blast resistant rice variety through marker assisted selection