Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome-8

<p><b>Copyright information:</b></p><p>Taken from "Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome"</p><p>http://www.biomedcentral.com/1471-2164/8/401</p><p>BMC Genomics 2007;8():401-401.</p><p>Published online 2 Nov 2007</p><p>PMCID:PMC2174955.</p><p></p>el between two TAIR genes (649 cases) or GSTs designed in the 5' or 3' CDS extension of a TAIR gene (28 cases). TAIR CDS and mRNA models are represented by dark blue and light blue arrows respectively. Eugene CDS models are represented by purple arrows. Black lines are introns

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome-2

<p><b>Copyright information:</b></p><p>Taken from "Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome"</p><p>http://www.biomedcentral.com/1471-2164/8/401</p><p>BMC Genomics 2007;8():401-401.</p><p>Published online 2 Nov 2007</p><p>PMCID:PMC2174955.</p><p></p>cDNA, RACE PCR from TIGR or MPSS data (purple columns). They are summed up in the "other transcription evidence" class. The fractions of the novel genes sharing similarities with other genes (in Arabidopsis and/or in other species) are indicated in green. The orange column highlights the fraction of novel genes for which there is an indication complementary to CATMA data (homology or transcription) of the gene presence

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome-5

<p><b>Copyright information:</b></p><p>Taken from "Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome"</p><p>http://www.biomedcentral.com/1471-2164/8/401</p><p>BMC Genomics 2007;8():401-401.</p><p>Published online 2 Nov 2007</p><p>PMCID:PMC2174955.</p><p></p

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome-0

<p><b>Copyright information:</b></p><p>Taken from "Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome"</p><p>http://www.biomedcentral.com/1471-2164/8/401</p><p>BMC Genomics 2007;8():401-401.</p><p>Published online 2 Nov 2007</p><p>PMCID:PMC2174955.</p><p></p>el between two TAIR genes (649 cases) or GSTs designed in the 5' or 3' CDS extension of a TAIR gene (28 cases). TAIR CDS and mRNA models are represented by dark blue and light blue arrows respectively. Eugene CDS models are represented by purple arrows. Black lines are introns

Additional file 1: of Sub-cellular markers highlight intracellular dynamics of membrane proteins in response to abiotic treatments in rice

Figure S1. Subcellular localisation of rice proteins in Arabidopsis root cells. Figure S2. Autofluorescence background in rice primary root cells. Figure S3. Re-localization of rice aquaporins in Arabidopsis root under salt and osmotic stresses. Figure S4. Re-localization of plasma membrane aquaporins in rice primary root under salt and osmotic stresses. Figure S5. Subcellular localization of plasma-membrane protein-marker LTi6a-CFP in rice root under salt and osmotic stresses. (PDF 623 kb

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome-1

<p><b>Copyright information:</b></p><p>Taken from "Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome"</p><p>http://www.biomedcentral.com/1471-2164/8/401</p><p>BMC Genomics 2007;8():401-401.</p><p>Published online 2 Nov 2007</p><p>PMCID:PMC2174955.</p><p></p>tase, gels 2, 4, 6 and 8) from mRNA of leaves, roots, flowers and pollen. Primer pairs 1 to 24 have been used for leaves, roots and flowers, while the 25 to 41 pairs have been used for pollen (for pollen-specific genes only). The table to the right of the figure indicates the correspondence between a primer pair and the corresponding CATMA probe (GST). Primer sequences are given in the additional file

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome-4

<p><b>Copyright information:</b></p><p>Taken from "Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome"</p><p>http://www.biomedcentral.com/1471-2164/8/401</p><p>BMC Genomics 2007;8():401-401.</p><p>Published online 2 Nov 2007</p><p>PMCID:PMC2174955.</p><p></p>es are truncated at 5%. Data for all the Arabidopsis genes are represented in blue and those for the 465 novel genes are represented in orange. In the inserted chart % of gene values are not truncated

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome-6

<p><b>Copyright information:</b></p><p>Taken from "Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome"</p><p>http://www.biomedcentral.com/1471-2164/8/401</p><p>BMC Genomics 2007;8():401-401.</p><p>Published online 2 Nov 2007</p><p>PMCID:PMC2174955.</p><p></p>nal activity): The minimum intensity in any of the hybridizations is in blue and orange for all the Arabidopsis genes and the 465 novel genes respectively. The maximum intensity is in purple and yellow for all the Arabidopsis genes and the novel genes respectively

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome-3

<p><b>Copyright information:</b></p><p>Taken from "Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome"</p><p>http://www.biomedcentral.com/1471-2164/8/401</p><p>BMC Genomics 2007;8():401-401.</p><p>Published online 2 Nov 2007</p><p>PMCID:PMC2174955.</p><p></p> has predicted an intron-exon structure

Additional file 2: of Sub-cellular markers highlight intracellular dynamics of membrane proteins in response to abiotic treatments in rice

Table S1. Overview of molecular cloning of membrane protein markers. (DOCX 16 kb