28 research outputs found
All landscape variable values
No full textMeasurements for all landscape variables both at natal site and along migration paths for every collection locality
Full RAD Loci Stats
No full textLarge table including stats for each RAD locus globally and by population. The RAD sequence, mapping position to the O. mykiss assembly, and outlier classification are included for each locus. Additionally, the genotype success rate, observed heterozygosity, expected heterozygosity, minor allele frequency, and HWE corrected P.val (FDR) are included globally and for each population
Top BLAST hits
No full textTop BLAST hits for loci identified by the majority of outlier tests (3/4) and GEA analyses (2/3). For each SNP, the environmental association and category (if applicable) are included. Additionally, the top BLAST hit and nearest gene (within 10 kb) are included with their GO terms
Tag sequences and population genetic stats
No full textTag sequences for all of the RAD loci used in this study. Additionally, the mapping position in the O. mykiss genome and summary population genetic statistics for each population
All landscape variable values
No full textMeasurements for all landscape variables both at natal site and along migration paths for every collection locality
Top BLAST hits
No full textTop BLAST hits for loci identified by the majority of outlier tests (3/4) and GEA analyses (2/3). For each SNP, the environmental association and category (if applicable) are included. Additionally, the top BLAST hit and nearest gene (within 10 kb) are included with their GO terms
Pairwise FST Table
No full textPairwise population FST calculated by hierfstat. FST values are represented between each cluster (k=3), globally between populations, and between populations within each genetic cluster
Pairwise FST Table
No full textPairwise population FST calculated by hierfstat. FST values are represented between each cluster (k=3), globally between populations, and between populations within each genetic cluster
Full RAD Loci Stats
No full textLarge table including stats for each RAD locus globally and by population. The RAD sequence, mapping position to the O. mykiss assembly, and outlier classification are included for each locus. Additionally, the genotype success rate, observed heterozygosity, expected heterozygosity, minor allele frequency, and HWE corrected P.val (FDR) are included globally and for each population
Individual Read Statistics
No full textRead statistics for each individual after process_radtags was performed
