Additional file 6 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 6. SVs that are hidden to aligners – Extended analysis. Contains Fig. S5, S6, and S7

Additional file 15 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 15. Review history

Additional file 13 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 13. Fuzzy inference of edges from MEMs. Contains Fig. S15

Additional file 3 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 3. Unfolded matrices and full graphs for Fig. 1 of themain text. Contains Fig. S2 and S3

Additional file 1 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 1. Breakends versus Breakpoints

Additional file 9 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 9. The sentinel vertex. Contains Fig. S11 and Table S1

Additional file 12 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 12. Detailed description of overlap-elimination. Contains Fig. S14

Additional file 5 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 5. Description of the SV caller prototype and benchmarking environment

Additional file 10 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 10. Ambiguities inherent to basic SV. Contains Fig. S12

Additional file 4 of MSV: a modular structural variant caller that reveals nested and complex rearrangements by unifying breakends inferred directly from reads

Additional file 4. Experimental setup for the generation of nested genomic rearrangements. Contains Fig. S4