Poster: Haplotypes and Human Diversity in Proteomics

Poster presented at the EuBIC-MS Winter School 2024ProHap is a python-based tool built to efficiently generate protein haplotype databases from phased genotypes of reference population panels.Full paper (preprint): https://doi.org/10.1101/2023.12.24.572591</p

Supplementary Data: Identifying Protein Haplotypes by Mass Spectrometry

Supplementary data related to the paper "Identifying Protein Haplotypes by Mass Spectrometry" SD1: FASTA file including all target protein sequences (Ensembl reference proteome, protein haplotype sequences, contaminant sequences), excluding decoys SD2: FASTA file including all target and decoy sequences SD3: List of all peptide-spectrum matches (PSMs) with all related metadata and quality control measures SD4: List of substitutions identified, along with IDs of corresponding PSMs To reproduce the post-processing steps, you can use the pipeline published at https://github.com/ProGenNo/IdentifyingHaplotypesByMS The repository also contains additional explanations of supplementary files contents.</p