Features of subtype B HIV-1 quasispecies isolated from Argentinian men who have sex with men and Trinidadian heterosexuals recently following seroconversion.

<p>DPS = days post seroconversion.</p

Neighbour-joining phylogeny of HIV-1 quasispecies based on <i>env</i> V1–V4.

<p>(A) Phylogeny of quasispecies isolated from Argentinean MSM and (B) Phylogeny of quasispecies isolated from Trinidadian heterosexuals. The sequences were isolated from samples collected soon after seroconversion. Percentage intrapatient diversity is presented for each patient and * highlights the patient who is infected by distantly related strains.</p

Comparison of the median length and number of N-Linked Glycosylation Sites in the <i>Env</i> V2 and V3 of Subtype B HIV-1 from Trinidad and the Rest of the World (p-values represent comparison between recently transmitted HIV-1 from Trinidadian heterosexuals and others).

<p>ns =  not significant, </p><p>*bulk database sequences for two Argentinians within 3 months of seroconversion were included in the analyses,</p><p>**bulk database sequences <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0019995#pone.0019995-Nadai1" target="_blank">[2]</a>.</p

Multiple alignment of <i>env</i> V2. All available (n = 46) V2 loop sequences from subtype B HIV-1 from Trinidad are present in the alignment.

<p>Multiple alignment of <i>env</i> V2. All available (n = 46) V2 loop sequences from subtype B HIV-1 from Trinidad are present in the alignment.</p

Phylogeny of subtype B HIV-1 from Trinidad.

<p>Phylogeny was inferred using the neighbour-joining algorithm and is based on <i>env</i> V1-V4.</p

Additional file 1: of Genotyping of high-risk anal human papillomavirus (HPV): ion torrent-next generation sequencing vs. linear array

The tabular data used in the analyses for this manuscript is included as an excel file. This data includes both the LA and NGS results for each of the types detected on the 10 samples. (XLS 57 kb

Additional file 1: of Correlates of facility delivery for rural HIV-positive pregnant women enrolled in the MoMent Nigeria prospective cohort study

Enrollment Form for pregnant HIV-positive women (Case Report Form 1). Form captures baseline socio-demographic, obstetric, and other clinical data for all women enrolled in the MoMent study. (PDF 113 kb

Phylogenetic analysis of 14 nearly full genome sequences of HIV-1 Subtype B from Caribbean countries: Trinidad and Tobago (TT), Dominican Republic (DO), Haiti (HT) and Jamaica (JM).

<p>Reference subtype B sequences are indicated by the country of origin; they are: US: MN, JRCSF, SF2, WR27, P896, NY5, BCSG3C, YU2, RF, U23487; DE: D31, HAN; GB: CAM1, study sequences (bold) are identified by name. A neighbor-joining phylogenetic tree was built using the Kimura 2-parameter model and significant parsimony bootstrap values (>70%) were placed next to the nodes. The genetic distance corresponding to the lengths of the branches is shown by the scale below the tree.</p

Amino acid sites that differ between the Caribbean B strains and the subtype B reference strains.

<p>Amino acid sites that differ between the Caribbean B strains and the subtype B reference strains.</p