27 research outputs found
Relative sublevel populations due to OSP and ZFS parameters of haloanthracenes determined through best fit simulations of the TR-EPR spectra shown in Fig 3.
<p>Relative sublevel populations due to OSP and ZFS parameters of haloanthracenes determined through best fit simulations of the TR-EPR spectra shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.g003" target="_blank">Fig 3</a>.</p
SLR times of haloanthracenes obtained from best fit simulations of ESE EPR detected triplet kinetics, partially shown in Fig 4.
<p>For the full set of decay curves and their simulations, cf. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s001" target="_blank">S1</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s002" target="_blank">S2</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s003" target="_blank">S3</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s004" target="_blank">S4</a> Figs. Since in the case of 3, the signals of the canonical X and Y direction can not be distinguished spectrally, the mutual SLR times are given in the X columns. The numbers in braces indicate the width of the distributions of the parameters, described in terms of 2<i>σ</i> of corresponding normal distributions, as obtained from Monte Carlo simulations.</p
Excited triplet state sublevel scheme and transition rate constants.
<p>The dotted arrows indicate combined radiationless (ISC) and radiative (phosphorescence) decay.</p
TR-EPR spectra of haloanthracenes.
<p>The TR-EPR spectra (solid lines) and corresponding spectral simulations (dashed, shifted vertically for better visibility). Absorption and emission are indicated by arrows at the left ordinate. A: Anthracene (<b>1</b>), B: Bromoanthracene (<b>2</b>), C: Dibromoanthracene (<b>3</b>), D: Iodoanthracene (<b>4</b>). Recorded at 20 K in X band. Relative sublevel populations and ZFS parameters of the simulations can be found in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.t001" target="_blank">Table 1</a>. For the full set of parameters, cf. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s013" target="_blank">S3 Table</a>.</p
Triplet life times of haloanthracenes obtained from best fit simulations of ESE EPR detected triplet kinetics, as exemplary shown in Fig 4.
<p>For the full set of decay curves and their simulations, cf. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s001" target="_blank">S1</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s002" target="_blank">S2</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s003" target="_blank">S3</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s004" target="_blank">S4</a> Figs. Since in the case of 3, the signals of the canonical X and Y direction can not be distinguished spectrally, the mutual triplet life times are given in the X column. For 1, the triplet life time has been determined in a separate measurement (cf. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.s005" target="_blank">S5 Fig</a>), in good agreement to the value found in the literature [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.ref029" target="_blank">29</a>] (≈ 40 ms), and was held constant. In the cases of 1 and 2 no triplet decay anisotropy was found, meaning that <i>k</i><sub>X</sub> = <i>k</i><sub>Y</sub> = <i>k</i><sub>Z</sub> = <i>k</i>. The numbers in braces indicate the width of the distributions of the parameters, described in terms of 2<i>σ</i> of corresponding normal distributions, as obtained from Monte Carlo simulations.</p
Exemplary ESE detected triplet kinetics of two haloanthracenes.
<p>A: Anthracene (<b>1</b>). B: Dibromoanthracene (<b>3</b>). The Hahn spin echo amplitude (dots) is recorded at different temperatures (50 K, 30 K, and 10 K, from top to bottom) in X band as a function of the delay time <i>t</i><sub>DAF</sub> after photoexcitation for both allowed EPR transitions on the Z canonical orientation, 1Z being emissive and 2Z being absorptive as indicated with arrows at the left ordinate. The parameters obtained from the best fit simulations (solid lines) are given in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0184239#pone.0184239.t002" target="_blank">Table 2</a>. Note the different time scales.</p
A Genetically Encoded Spin Label for Electron Paramagnetic Resonance Distance Measurements
We
report the genetic encoding of a noncanonical, spin-labeled
amino acid in <i>Escherichia coli</i>. This enables the
intracellular biosynthesis of spin-labeled proteins and obviates the
need for any chemical labeling step usually required for protein electron
paramagnetic resonance (EPR) studies. The amino acid can be introduced
at multiple, user-defined sites of a protein and is stable in <i>E. coli</i> even for prolonged expression times. It can report
intramolecular distance distributions in proteins by double-electron
electron resonance measurements. Moreover, the signal of spin-labeled
protein can be selectively detected in cells. This provides elegant
new perspectives for in-cell EPR studies of endogenous proteins
Gd(III)-PyMTA Label Is Suitable for In-Cell EPR
Distance measurement in the nanometer
range by electron paramagnetic
resonance spectroscopy (EPR) in combination with site-directed spin
labeling is a very powerful tool to monitor the structure and dynamics
of biomacromolecules in their natural environment. However, in-cell
application is hampered by the short lifetime of the commonly used
nitroxide spin labels in the reducing milieu inside a cell. Here,
we demonstrate that the GdÂ(III) based spin label Gd-PyMTA is suitable
for in-cell EPR. Gd-PyMTA turned out to be cell compatible and was
proven to be inert in in-cell extracts of <i>Xenopus laevis</i> oocytes at 18 °C for more than 24 h. The proline rich peptide
H-AP<sub>10</sub>CP<sub>10</sub>CP<sub>10</sub>-NH<sub>2</sub> was
site-directedly spin labeled with Gd-PyMTA at both cysteine moieties.
The resulting peptide, H-AP<sub>10</sub>CÂ(Gd-PyMTA)ÂP<sub>10</sub>CÂ(Gd-PyMTA)ÂP<sub>10</sub>-NH<sub>2</sub>, as well as the model compound Gd-spacer-Gd,
which consists of a spacer of well-known stiffness, were microinjected
into <i>Xenopus laevis</i> oocytes, and the GdÂ(III)–GdÂ(III)
distances were determined by double electron–electron resonance
(DEER) spectroscopy. To analyze the intracellular peptide conformation,
a rotamer library was set up to take the conformational flexibility
of the tether between the GdÂ(III) ion and the C<sub>α</sub> of
the cysteine moiety into account. The results suggest that the spin
labeled peptide H-AP<sub>10</sub>CÂ(Gd-PyMTA)ÂP<sub>10</sub>CÂ(Gd-PyMTA)ÂP<sub>10</sub>-NH<sub>2</sub> is inserted into cell membranes, coinciding
with a conformational change of the oligoproline from a PPII into
a PPI helix
Negative and Positive Confinement Effects in Chiral Separation Chromatography Monitored with Molecular-Scale Precision by In-Situ Electron Paramagnetic Resonance Techniques
Separation
of compounds using liquid chromatography is a process
of enormous technological importance. This is true in particular for
chiral substances, when one enantiomer has the desired set of properties
and the other one may be harmful. The degree of development in liquid
chromatography is extremely high, but still there is a lack in understanding
based on experimental data how selectivity works on a molecular level
directly at the surfaces of a porous host material. We have prepared
amino-acid containing organosilica as such host materials. Watching
the rotational dynamics of chiral spin probes using electron paramagnetic
resonance spectroscopy allows us to differentiate between surface
adsorbed and free guest species. Diastereotopic selectivity factors
were determined, and the influence of chiral surface group density,
chemical character of the surface groups, pore-size, and temperature
was investigated. We found higher selectivity values in macroporous
solids with a rather rigid organosilica network and at lower temperature,
indicating the significant effect of confinement effects. In mesoporous
materials features are opposed with regards to the T-dependent behavior.
From EPR imaging techniques and the resulting (macroscopic) diffusion
coefficients, we could confirm that the correlations found on the
microscopic level transform also to the macroscopic behavior. Thus,
our study is of value for the development of future chromatography
materials by design