Plasmons in Sodium under Pressure: Increasing Departure from Nearly-Free-Electron Behavior

We have measured plasmon energies in Na under high pressure up to 43 GPa using inelastic x-ray scattering (IXS). The momentum-resolved results show clear deviations, growing with increasing pressure, from the predictions for a nearly-free electron metal. Plasmon energy calculations based on first-principles electronic band structures and a quasi-classical plasmon model allow us to identify a pressure-induced increase in the electron-ion interaction and associated changes in the electronic band structure as the origin of these deviations, rather than effects of exchange and correlation. Additional IXS results obtained for K and Rb are addressed briefly.Comment: 5 pages, 4 figure

The phonon dispersion of graphite by inelastic x-ray scattering

We present the full in-plane phonon dispersion of graphite obtained from inelastic x-ray scattering, including the optical and acoustic branches, as well as the mid-frequency range between the $K$ and $M$ points in the Brillouin zone, where experimental data have been unavailable so far. The existence of a Kohn anomaly at the $K$ point is further supported. We fit a fifth-nearest neighbour force-constants model to the experimental data, making improved force-constants calculations of the phonon dispersion in both graphite and carbon nanotubes available.Comment: 7 pages; submitted to Phys. Rev.

High frequency acoustic modes in liquid gallium at the melting point

The microscopic dynamics in liquid gallium (l-Ga) at melting (T=315 K) has been studied by inelastic x-ray scattering. We demonstrate the existence of collective acoustic-like modes up to wave-vectors above one half of the first maximum of the static structure factor, at variance with earlier results from inelastic neutron scattering data [F.J. Bermejo et al. Phys. Rev. E 49, 3133 (1994)]. Despite the structural (an extremely rich polymorphism and rather complex phase diagram) and electronic (mixed valence) peculiarity of l-Ga, its collective dynamics is strikingly similar to the one of Van der Walls and alkali metals liquids. This result speaks in favor of the universality of the short time dynamics in monatomic liquids rather than of system-specific dynamics.Comment: LaTex format, 11 pages, 4 EncapsulatedPostScript figure

High-frequency dynamics in the near-surface region studied by inelastic x-ray scattering: The case of liquid indium

Inelastic x-ray scattering in grazing angle geometry provides a novel tool for studying the surface and bulk lattice dynamics in a single experiment by varying the incidence angle around the critical angle of total reflection. At very small incidence angles (below the critical angle), it is possible to study the collective dynamics in a subsurface region of a few nanometres at interatomic length and time scales. An experimental study on liquid indium in the near-surface region is presented here and the results are analysed within a theoretical framework, based on classical hydrodynamics for the height-height fluctuations (capillary waves and non-propagating fluctuations) and generalized hydrodynamics for the bulk density fluctuations. The investigation reveals the presence of capillary waves in the inelastic x-ray spectra as an additional contribution at zero-energy transfer and a modification of the bulk density fluctuation contribution. A longer structural relaxation time and a larger longitudinal viscosity with respect to bulk indium are observed, similarly to related studies in confined liquids. © IOP Publishing Ltd and Deutsche Physikalische Gesellschaft

Gene Network Visualization and Quantitative Synteny Analysis of more than 300 Marine T4-Like Phage Scaffolds from the GOS Metagenome

Bacteriophages (phages) are the most abundant biological entities in the biosphere and are the dominant “organisms” in marine environments, exerting an enormous influence on marine microbial populations. Metagenomic projects, such as the Global Ocean Sampling expedition (GOS), have demonstrated the predominance of tailed phages (Caudovirales), particularly T4 superfamily cyanophages (Cyano-T4s), in the marine milieu. Whereas previous metagenomic analyses were limited to gene content information, here we present a comparative analysis of over 300 phage scaffolds assembled from the viral fraction of the GOS data. This assembly permits the examination of synteny (organization) of the genes on the scaffolds and their comparison with the genome sequences from cultured Cyano-T4s. We employ comparative genomics and a novel usage of network visualization software to show that the scaffold phylogenies are similar to those of the traditional marker genes they contain. Importantly, these uncultured metagenomic scaffolds quite closely match the organization of the “core genome” of the known Cyano-T4s. This indicates that the current view of genome architecture in the Cyano-T4s is not seriously biased by being based on a small number of cultured phages, and we can be confident that they accurately reflect the diverse population of such viruses in marine surface waters