Delimitation of Some Taxa of Ulnaria and Fragilaria (Bacillariophyceae) Based on Genetic, Morphological Data and Mating Compatibility

Fragilaria and Ulnaria are two closely related diatom genera for which the delimitation and circumscription of several species is unclear. We studied strains isolated from Lake Baikal and compared them with the species from freshwater reservoirs in Europe and Asia using phylogenetic and species delimitation methods, microscopy and interclonal crossing experiments. The results of the phylogenetic analyses of the fragments of rbcL and 18S rRNA genes revealed that baikalian F. radians clade was independent from the representatives of the genus from other localities. Among Ulnaria we found the following 18S rRNA phylogenetic tree groups at species level: U. acus, U. ulna and U. danica. Genetic distance between genera varied between 3.9-10.2% substitutions in rbcL gene and 3.2-11.5% in 18S rRNA. The boundary between intraspecies and interspecies polymorphism for studied species of Ulnaria and Fragilaria in these marker genes was around 0.8% substitutions. Morphometric characters of individual strains showed their variability and division into F. radians, U. acus and U. ulna together with U. danica. Strains of U. acus and U. danica from different localities of Europe and Asia were sexually compatible inside the species. Sexual reproduction has never been observed in monoclonal cultures, either between this species or with strains of the Fragilaria

Silica-scaled chrysophytes in large tributaries of Lake Baikal

High diversity of silica-scaled chrysophytes was recorded in the Barguzin River mouth and the Selenga River delta. Their flora was represented by 66 species and intraspecific taxa: Chrysosphaerella – 2, Paraphysomonas – 8, Clathromonas – 5, Spiniferomonas – 8, Mallomonas – 29, and Synura – 14. Eight taxa of silica-scaled chrysophytes were observed for the first time in Russia: Chrysosphaerella rotundata, Mallomonas doignonii, M. trummensis, M. corymbosa, Clathromonas poteriophora, Paraphysomonas acuminata acuminata, P. vulgaris, and Synura laticarina. In May, we found scales of Mallomonas striata with morphologically changed structure in the mouth of the Barguzin River and Srednyaya Channel of the Selenga River delta. The flora of silica-scaled chrysophytes studied differs from one tributary to another. We observed only 52 species in the Selenga River delta, whereas in the Barguzin River mouth we identified 35 species. These large rivers affect the flora of Lake Baikal diversifying silica-scaled chrysophytes in its southern and central basins. The total list of species and intra-specific taxa in the Selenga River delta, Barguzin River mouth, and in Lake Baikal includes 72 taxa. Therefore, this area may be considered as a “hotspot” of silica-scaled chrysophytes together with three hotspots observed worldwide earlier.</p

Diversity Variation of Silica-Scaled Chrysophytes Related to Differences in Physicochemical Variables in Estuaries of Rivers in an Arctic Watershed

The present study examined the taxonomic diversity of silica-scaled chrysophytes in the estuaries of the Arctic watershed of Yakutia in the context of global climate change, as these aquatic organisms are highly sensitive to environmental changes. Previously, 41 species of silica-scaled chrysophytes were recorded in the waters of Yakutia. In the present study, we supplemented this list with 55 species. We observed a high species richness (82 taxa) of silica-scaled chrysophytes in the study area. Of these, eight species were recorded in the waters of Russia for the first time. At present, the study area represents the northernmost habitat for most species observed during the study. The diversity of silica-scaled chrysophytes in Arctic rivers is comparable to or even greater than the diversity of chrysophycean flora at the middle latitudes. Most of these chrysophytes are represented by polyzonal and ubiquitous species. During 2008–2010, we noted increased relative numbers of boreal species in northern waters compared with data obtained during the previous 30 years. Overall, the species richness of silica-scaled chrysophytes in the studied rivers increased with increase in water transparency, temperature, and magnesium ion concentration, but decreased with increase in surfactant concentration. The origin of samples from a certain river; distance of the sampling site from the estuary; water temperature, transparency, and colour; and concentration of carbon dioxide, magnesium ions, total iron, surfactants, and oil products affect the species composition of silica-scaled chrysophytes in the study area. Our findings are fundamental to evaluate the current status of Arctic aquatic microflora and its further monitoring in the context of anthropogenic and climatic impacts

Data from: A new subfamily LIP of the major intrinsic proteins

Background: Proteins of the major intrinsic protein (MIP) family, or aquaporins, have been detected in almost all organisms. These proteins are important in cells and organisms because they allow for passive transmembrane transport of water and other small, uncharged polar molecules. Results: We compared the predicted amino acid sequences of 20 MIPs from several algae species of the phylum Heterokontophyta (Kingdom Chromista) with the sequences of MIPs from other organisms. Multiple sequence alignments revealed motifs that were homologous to functionally important NPA motifs and the so-called ar/R-selective filter of glyceroporins and aquaporins. The MIP sequences of the studied chromists fell into several clusters that belonged to different groups of MIPs from a wide variety of organisms from different Kingdoms. Two of these proteins belong to Plasma membrane intrinsic proteins (PIPs), four of them belong to GlpF-like intrinsic proteins (GIPs), and one of them belongs to a specific MIPE subfamily from green algae. Three proteins belong to the unclassified MIPs, two of which are of bacterial origin. Eight of the studied MIPs contain an NPM-motif in place of the second conserved NPA-motif typical of the majority of MIPs. The MIPs of heterokonts within all detected clusters can differ from other MIPs in the same cluster regarding the structure of the ar/R-selective filter and other generally conserved motifs. Conclusion: We proposed placing nine MIPs from heterokonts into a new group, which we have named the LIPs (large intrinsic proteins). The possible substrate specificities of the studied MIPs are discussed

Diversity Variation of Silica-Scaled Chrysophytes Related to Differences in Physicochemical Variables in Estuaries of Rivers in an Arctic Watershed

The present study examined the taxonomic diversity of silica-scaled chrysophytes in the estuaries of the Arctic watershed of Yakutia in the context of global climate change, as these aquatic organisms are highly sensitive to environmental changes. Previously, 41 species of silica-scaled chrysophytes were recorded in the waters of Yakutia. In the present study, we supplemented this list with 55 species. We observed a high species richness (82 taxa) of silica-scaled chrysophytes in the study area. Of these, eight species were recorded in the waters of Russia for the first time. At present, the study area represents the northernmost habitat for most species observed during the study. The diversity of silica-scaled chrysophytes in Arctic rivers is comparable to or even greater than the diversity of chrysophycean flora at the middle latitudes. Most of these chrysophytes are represented by polyzonal and ubiquitous species. During 2008&ndash;2010, we noted increased relative numbers of boreal species in northern waters compared with data obtained during the previous 30 years. Overall, the species richness of silica-scaled chrysophytes in the studied rivers increased with increase in water transparency, temperature, and magnesium ion concentration, but decreased with increase in surfactant concentration. The origin of samples from a certain river; distance of the sampling site from the estuary; water temperature, transparency, and colour; and concentration of carbon dioxide, magnesium ions, total iron, surfactants, and oil products affect the species composition of silica-scaled chrysophytes in the study area. Our findings are fundamental to evaluate the current status of Arctic aquatic microflora and its further monitoring in the context of anthropogenic and climatic impacts

Lipid and Fatty Acids Accumulation Features of Entomoneis cf. paludosa during Exponential and Stationary Growth Phases in Laboratory Culture

Diatoms are capable of accumulating substantial amounts of triacylglycerides in their cells, which differ in the composition of fatty acids depending on the conditions of cultivation, making them attractive subjects in biotechnology. In the present study, we characterized the structural features of lipid bodies in the diatom Entomoneis cf. paludosa (W. Smith) Reimer strain 8.0727-B and revealed the peculiarities of fatty acid composition in cultures during the stationary and exponential growth phases. Laser scanning confocal microscopy revealed an increased number of lipid bodies in the cytoplasm during the stationary phase of culture growth. Electron microscopy of ultrathin sections showed that an extreme increase in the number and size of plastoglobules in the cells occurs in the stationary phase of culture growth. The gas chromatography with mass spectrometric detection method revealed differences in the fatty acid composition depending on the growth phase. The studied strain can be recommended as a source of hexadecanoic and octadecanoic fatty acids from the culture during the stationary growth phase, as well as eicosapentaenoic fatty acid from the culture during the exponential growth phase

Impact of Algicidal Bacillus mycoides on Diatom Ulnaria acus from Lake Baikal

Algae–bacteria interactions play an important role in water ecosystems. In this work, the BS2-15 algicidal strain was isolated from the bottom sediments of Lake Baikal and identified as Bacillus mycoides on the basis of 16S rDNA sequencing, its described ultrastructure, and biochemical properties. B. mycoides BS2-15 was demonstrated to have a strong algicidal effect against a freshwater diatom culture of Ulnaria acus, inhibiting its growth and increasing frustules fragility. By analyzing the impact of bacterial filtrate onto the cells of U. acus, we demonstrated that perhaps an algicidal compound is produced by bacteria independently in the presence of diatoms in a medium. Using methods of TUNEL and confocal microscopy, we revealed that the bacterial algicidal effect on the diatom cells results in DNA fragmentation, nucleus destruction, and neutral lipid accumulation. This phenomenon highlights the complexity of algae–bacteria interactions and their potential role in regulating water ecosystem microbial populations