Additional file 2: of New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus)

Figure S1. Paired-end read coverage of 2181 scaffolds. Sequencing depth is on the x-axis while the y-axis shows the percentage of total bases at a given depth. Reads were aligned to the genome using BWA. (PDF 156 kb

Additional file 3: of New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus)

Table S2. Top Pfam domain hits in the F. mexicanus genome and their counts. (PDF 175 kb

Additional file 7: of New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus)

Table S3. Locus-specific pairwise FST values for prairie falcons in the San Francisco East Bay Area (East Bay), Pinnacles National Park (Pinnacles), the Mojave Desert (Mojave) and Idaho. (PDF 281 kb

Additional file 6: of New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus)

Figure S4. Results of LOSITAN and BAYESCAN analyses. a) The confidence area for candidate loci under positive selection is shown in red. LOSITAN identified two outlier loci: X1613239_349604 (CACNA1G) and X1613580_160905 (A2ML1). b) No outlier loci were detected via BAYESCAN analysis. Posterior odds are plotted on the x axis and FST index values on the y axis. (PDF 36 kb