3 research outputs found

    Binning strategy. Single binner vs multi-binning with DAS-tool

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    Compare different binning strategy on mock community data (ZymoBIOMICS® Gut Microbiome Standard Catalog No. D6331). Single binner vs multi-binning with DAS-tool.</p

    CheckM12_comparison.xlsx

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    Evaluation Bins quality. CheckM1 vs CheckM2</p

    POCP-matrix calculation for a number of genomes

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    This script takes FASTA files of protein sequences and calculates the POCP matrix (Qin et al. 2014; Journal of Bacteriology). This script is based on the script "POCP calculation for two genomes" of Anony Moose's. The main novelty is the possibility of comparing a large number of genomes pairs of comparison.<div><br></div><div><div>In directory shod be a script data_file_4.sh and fast file for each bacterial genome - NAMEf1.faa, NAMEf2.faa, NAMEf3.faa …</div><div><br></div><div>RUN: bash runPOCP.sh</div></div
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