10,623 research outputs found

    Theory of Bubble Nucleation and Cooperativity in DNA Melting

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    The onset of intermediate states (denaturation bubbles) and their role during the melting transition of DNA are studied using the Peyrard-Bishop-Daxuois model by Monte Carlo simulations with no adjustable parameters. Comparison is made with previously published experimental results finding excellent agreement. Melting curves, critical DNA segment length for stability of bubbles and the possibility of a two states transition are studied.Comment: 4 figures. Accepted for publication in Physical Review Letter

    Gravitational waveforms with controlled accuracy

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    A partially first-order form of the characteristic formulation is introduced to control the accuracy in the computation of gravitational waveforms produced by highly distorted single black hole spacetimes. Our approach is to reduce the system of equations to first-order differential form on the angular derivatives, while retaining the proven radial and time integration schemes of the standard characteristic formulation. This results in significantly improved accuracy over the standard mixed-order approach in the extremely nonlinear post-merger regime of binary black hole collisions.Comment: Revised version, published in Phys. Rev. D, RevTeX, 16 pages, 4 figure

    Linearized solutions of the Einstein equations within a Bondi-Sachs framework, and implications for boundary conditions in numerical simulations

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    We linearize the Einstein equations when the metric is Bondi-Sachs, when the background is Schwarzschild or Minkowski, and when there is a matter source in the form of a thin shell whose density varies with time and angular position. By performing an eigenfunction decomposition, we reduce the problem to a system of linear ordinary differential equations which we are able to solve. The solutions are relevant to the characteristic formulation of numerical relativity: (a) as exact solutions against which computations of gravitational radiation can be compared; and (b) in formulating boundary conditions on the r=2Mr=2M Schwarzschild horizon.Comment: Revised following referee comment

    High-powered Gravitational News

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    We describe the computation of the Bondi news for gravitational radiation. We have implemented a computer code for this problem. We discuss the theory behind it as well as the results of validation tests. Our approach uses the compactified null cone formalism, with the computational domain extending to future null infinity and with a worldtube as inner boundary. We calculate the appropriate full Einstein equations in computational eth form in (a) the interior of the computational domain and (b) on the inner boundary. At future null infinity, we transform the computed data into standard Bondi coordinates and so are able to express the news in terms of its standard N+N_{+} and N×N_{\times} polarization components. The resulting code is stable and second-order convergent. It runs successfully even in the highly nonlinear case, and has been tested with the news as high as 400, which represents a gravitational radiation power of about 1013M⊙/sec10^{13}M_{\odot}/sec.Comment: 24 pages, 4 figures. To appear in Phys. Rev.

    Valley polarization and susceptibility of composite fermions around nu=3/2

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    We report magnetotransport measurements of fractional quantum Hall states in an AlAs quantum well around Landau level filling factor nu = 3/2, demonstrating that the quasiparticles are composite Fermions (CFs) with a valley degree of freedom. By monitoring the valley level crossings for these states as a function of applied symmetry-breaking strain, we determine the CF valley susceptibility and polarization. The data can be explained well by a simple Landau level fan diagram for CFs, and are in nearly quantitative agreement with the results reported for CF spin polarization.Comment: to appear in Phys. Rev. Let

    Influence of quantum fluctuations on zero-temperature phase transitions between collinear and noncollinear states in frustrated spin systems

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    We study a square-lattice spin-half Heisenberg model where frustration is introduced by competing nearest-neighbor bonds of different signs. We discuss the influence of quantum fluctuations on the nature of the zero-temperature phase transitions from phases with collinear magnetic order at small frustration to phases with noncollinear spiral order at large frustration. We use the coupled cluster method (CCM) for high orders of approximation (up to LSUB6) and the exact diagonalization of finite systems (up to 32 sites) to calculate ground-state properties. The role of quantum fluctuations is examined by comparing the ferromagnetic-spiral and the antiferromagnetic-spiral transition within the same model. We find clear evidence that quantum fluctuations prefer collinear order and that they may favour a first order transition instead of a second order transition in case of no quantum fluctuations.Comment: 6 pages, 6 Postscipt figures; Accepted for publication in Phys. Rev.

    Probing the mechanical unzipping of DNA

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    A study of the micromechanical unzipping of DNA in the framework of the Peyrard-Bishop-Dauxois model is presented. We introduce a Monte Carlo technique that allows accurate determination of the dependence of the unzipping forces on unzipping speed and temperature. Our findings agree quantitatively with experimental results for homogeneous DNA, and for λ\lambda-phage DNA we reproduce the recently obtained experimental force-temperature phase diagram. Finally, we argue that there may be fundamental differences between {\em in vivo} and {\em in vitro} DNA unzipping
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