The status of Rangifer tarandus caribou in Yukon, Canada

This paper summarizes the population trends as well as research and management programs for woodland caribou {Rangifer tarandus caribou) in Yukon. Most herds are stable although not all are counted regularly and systematic monitoring of herds remains an essential need. Over the past decade the Southern Lakes, Aishihik, and Finlayson herds have been well studied and provide valuable models for guiding Yukon management programs. Over harvest and the spread of agriculture, forestry and mining are ongoing human activities are of concern to caribou managers

Magnetic quantification of urban pollution sources in atmospheric particulate matter

A new method is presented for fast quantification of urban pollution sources in atmospheric particulate matter (PM). The remanent magnetization of PM samples collected in Switzerland at sites with different exposures to pollution sources is analysed. The coercivity distribution of each sample is calculated from detailed demagnetization curves of anhysteretic remanent magnetization (ARM) and is modelled using a linear combination of appropriate functions which represent the contribution of different sources of magnetic minerals to the total magnetization. Two magnetic components, C1 and C2, are identified in all samples. The low-coercivity component C1 predominates in less polluted sites, whereas the concentration of the higher-coercivity component C2 is large in urban areas. The same sites were monitored independently by Hüglin using detailed chemical analysis and a quantitative source attribution of the PM. His results are compared with the magnetic component analysis. The absolute and relative magnetic contributions of component C2 correlate very well with absolute and relative mass contributions of exhaust emissions, respectively. Traffic is the most important PM pollution source in Switzerland: it includes exhaust emissions and abrasion products released by vehicle brakes. Component C2 and traffic-related PM sources correlate well, which is encouraging for the implementation of non-destructive magnetic methods as an economic alternative to chemical analysis when mapping urban dust pollutio

Inelastic production of J/ψ mesons in photoproduction and deep inelastic scattering at HERA

A measurement is presented of inelastic photo- and electroproduction of J/ψ mesons in ep scattering at HERA. The data were recorded with the H1 detector in the period from 2004 to 2007. Single and double differential cross sections are determined and the helicity distributions of the J/ψ mesons are analysed. The results are compared to theoretical predictions in the colour singlet model and in the framework of non-relativistic QCD. Calculations in the colour singlet model using a k T factorisation ansatz are able to give a good description of the data, while colour singlet model calculations to next-to-leading order in collinear factorisation underestimate the data

Unexpected origins of the enhanced pairing affinity of 2 \u27-fluoro-modified RNA

Various chemical modifications are currently being evaluated for improving the efficacy of short interfering RNA (siRNA) duplexes as antisense agents for gene silencing in vivo. Among the 2\u27-ribose modifications assessed to date, 2\u27deoxy-2\u27-fluoro-RNA (2\u27-F-RNA) has unique properties for RNA interference (RNAi) applications. Thus, 2\u27-F-modified nucleotides are well tolerated in the guide (antisense) and passenger (sense) siRNA strands and the corresponding duplexes lack immunostimulatory effects, enhance nuclease resistance and display improved efficacy in vitro and in vivo compared with unmodified siRNAs. To identify potential origins of the distinct behaviors of RNA and 2\u27-F-RNA we carried out thermodynamic and X-ray crystallographic analyses of fully and partially 2\u27-F-modified RNAs. Surprisingly, we found that the increased pairing affinity of 2\u27-F-RNA relative to RNA is not, as commonly assumed, the result of a favorable entropic contribution (\u27conformational preorganization\u27), but instead primarily based on enthalpy. Crystal structures at high resolution and osmotic stress demonstrate that the 2\u27-F-RNA duplex is less hydrated than the RNA duplex. The enthalpy-driven, higher stability of the former hints at the possibility that the 2\u27-substituent, in addition to its important function in sculpting RNA conformation, plays an underappreciated role in modulating Watson-Crick base pairing strength and potentially pi-pi stacking interactions

Pedogenesis and carbon sequestration in transformed agricultural soils of Sicily

The increasing atmospheric CO2 concentration is a consequence of human activities leading to severe environmental deteriorations. Techniques are thus needed to sequester and reduce atmospheric carbon. One of the proposed techniques is the transformation or construction of new soils into which more organic carbon can be sequestered and CO2 be consumed by increased weathering. By using a chronosequence of new and transformed soils on crushed limestone (0–48 years) in a Mediterranean area (Sicily), we tried to quantify the amount of organic carbon that could be additionally sequestered and to derive the corresponding rates. A further aim was to trace chemical weathering and related CO2 consumption and the evolution of macropores that are relevant for water infiltration and plant nutrition. Owing to the irrigation of the table grape cultivation, the transformed soils developed fast. After about 48 years, the organic C stocks were near 12 kg m−2. The average org. C sequestration rates varied between 68 and 288 g m−2 yr−1. The C accumulation rates in the transformed soils are very high at the beginning and tend to decrease over (modelled) longer time scales. Over these 48 years, a substantial amount of carbonate was leached and reprecipitated as secondary carbonates. The proportion of secondary carbonates on the total inorganic carbon was up to 50%. Main mineralogical changes included the formation of interstratified clay minerals, the decrease of mica and increase of chloritic components as well as goethite. The atmospheric CO2 consumption due to silicate weathering was in the range of about 44–72 g C m−2 yr−1. Due to the high variability, the contribution of chemical weathering to CO2 consumption represents only an estimate. When summing up organic C sequestration and CO2 consumption by silicate weathering, rates in the order of 110–360 g C m−2 yr−1 are obtained. These are very high values. We estimated that high sequestration and CO2 consumption rates are maintained for about 50–100 years after soil transformation. The macropore volume decreased over the observed time span to half (from roughly 10 to 5 %). The transformation of soils may even amend their characteristics and increase agricultural production. Due to the relatively sandy character, enough macropores were present and no substantial compaction of the soils occurred. However, great caution has to be taken as such measures can trigger deterioration of both soil ecosystem services and soil quality

Reprogramming of Embryonic Human Fibroblasts into Fetal Hematopoietic Progenitors by Fusion with Human Fetal Liver CD34+ Cells

Experiments with somatic cell nuclear transfer, inter-cellular hybrid formation_ENREF_3, and ectopic expression of transcription factors have clearly demonstrated that cell fate can be dramatically altered by changing the epigenetic state of cell nuclei. Here we demonstrate, using chemical fusion, direct reprogramming of the genome of human embryonic fibroblasts (HEF) into the state of human fetal liver hFL CD34+ (hFL) hematopoietic progenitors capable of proliferating and differentiating into multiple hematopoietic lineages. We show that hybrid cells retain their ploidy and can differentiate into several hematopoietic lineages. Hybrid cells follow transcription program of differentiating hFL cells as shown by genome-wide transcription profiling. Using whole-genome single nucleotide polymorphism (SNP) profiling of both donor genomes we demonstrate reprogramming of HEF genome into the state of hFL hematopoietic progenitors. Our results prove that it is possible to convert the fetal somatic cell genome into the state of fetal hematopoietic progenitors by fusion. This suggests a possibility of direct reprogramming of human somatic cells into tissue specific progenitors/stem cells without going all the way back to the embryonic state. Direct reprogramming of terminally differentiated cells into the tissue specific progenitors will likely prove useful for the development of novel cell therapies

Gut microbiota composition as a candidate risk factor for dimethyl fumarate-induced lymphopenia in multiple sclerosis

Mounting evidence points towards a pivotal role of gut microbiota in multiple sclerosis (MS) pathophysiology. Yet, whether disease-modifying treatments alter microbiota composition and whether microbiota shape treatment response and side-effects remain unclear. In this prospective observational pilot study, we assessed the effect of dimethyl fumarate (DMF) on gut microbiota and on host/microbial metabolomics in a cohort of 20 MS patients. Combining state-of-the-art microbial sequencing, metabolome mass spectrometry, and computational analysis, we identified longitudinal changes in gut microbiota composition under DMF-treatment and an increase in citric acid cycle metabolites. Notably, DMF-induced lymphopenia, a clinically relevant safety concern, was correlated with distinct baseline microbiome signatures in MS patients. We identified gastrointestinal microbiota as a key therapeutic target for metabolic properties of DMF. By characterizing gut microbial composition as a candidate risk factor for DMF-induced lymphopenia, we provide novel insights into the role of microbiota in mediating clinical side-effects

Techniques for Arbuscular Mycorrhiza Inoculum Reduction

It is well established that arbuscular mycorrhizal (AM) fungi can play a significant role in sustainable crop production and environmental conservation. With the increasing awareness of the ecological significance of mycorrhizas and their diversity, research needs to be directed away from simple records of their occurrence or casual speculation of their function (Smith and Read 1997). Rather, the need is for empirical studies and investigations of the quantitative aspects of the distribution of different types and their contribution to the function of ecosystems. There is no such thing as a fungal effect or a plant effect, but there is an interaction between both symbionts. This results from the AM fungi and plant community size and structure, soil and climatic conditions, and the interplay between all these factors (Kahiluoto et al. 2000). Consequently, it is readily understood that it is the problems associated with methodology that limit our understanding of the functioning and effects of AM fungi within field communities. Given the ubiquous presence of AM fungi, a major constraint to the evaluation of the activity of AM colonisation has been the need to account for the indigenous soil native inoculum. This has to be controlled (i.e. reduced or eliminated) if we are to obtain a true control treatment for analysis of arbuscular mycorrhizas in natural substrates. There are various procedures possible for achieving such an objective, and the purpose of this chapter is to provide details of a number of techniques and present some evaluation of their advantages and disadvantages. Although there have been a large number of experiments to investigated the effectiveness of different sterilization procedures for reducing pathogenic soil fungi, little information is available on their impact on beneficial organisms such as AM fungi. Furthermore, some of the techniques have been shown to affect physical and chemical soil characteristics as well as eliminate soil microorganisms that can interfere with the development of mycorrhizas, and this creates difficulties in the interpretation of results simply in terms of possible mycorrhizal activity. An important subject is the differentiation of methods that involve sterilization from those focussed on indigenous inoculum reduction. Soil sterilization aims to destroy or eliminate microbial cells while maintaining the existing chemical and physical characteristics of the soil (Wolf and Skipper 1994). Consequently, it is often used for experiments focussed on specific AM fungi, or to establish a negative control in some other types of study. In contrast, the purpose of inoculum reduction techniques is to create a perturbation that will interfere with mycorrhizal formation, although not necessarily eliminating any component group within the inoculum. Such an approach allows the establishment of different degrees of mycorrhizal formation between treatments and the study of relative effects. Frequently the basic techniques used to achieve complete sterilization or just an inoculum reduction may be similar but the desired outcome is accomplished by adjustments of the dosage or intensity of the treatment. The ultimate choice of methodology for establishing an adequate non-mycorrhizal control depends on the design of the particular experiments, the facilities available and the amount of soil requiring treatment