Additional file 4: Figure S3. of High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

Multidimensional scaling (MDS) plot of libraries at the indicated time point post infection, based upon log Fold Change (logFC) values of expressed genes. Infected and uninfected libraries are observed to cluster discretely at each time point. (PNG 37 kb

Additional file 3: Table S1. of High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

Read mapping statistics for RNA-seq and small RNA-seq (sRNA-seq) libraries. For RNA-seq libraries, the numbers of reads mapping uniquely to the human reference genome are indicated. For sRNA-seq libraries, the numbers of reads mapping to mature miRNAs from miRBase are given. (XLSX 7 kb

Additional file 9: Table S4. of High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

Differentially expressed (DE) miRNAs identified in response to MAB-R and MAB-S infection. miRNAs were regarded as DE if they had an absolute Log2 Fold Change of at least 1, and an adjusted P-value (FDR) of less than 0.05. (XLSX 7 kb

Boletín de Segovia: Número 147 - 1841 diciembre 9

Copia digital. Madrid : Ministerio de Cultura. Subdirección General de Coordinación Bibliotecaria, 200

Additional file 7: of GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data

Scoring table for GO terms produced by GOexpress using the ExpressionSet described in the paper (see Additional file 1). (XLSX 871 kb

Additional file 2: of Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

Variant effect predictor results. Detailed results from the variant effect predictor (VEP) analyses applied to the CPC98 aurochs and modern animal SNPs and indels. (XLSX 114 kb