13 research outputs found

    Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of -1

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    Io data has been colour-coded according to data interpretation thresholds described in Taboada . []. Strains showing discordant clustering results are boxed in green.<p><b>Copyright information:</b></p><p>Taken from "Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of "</p><p>http://www.biomedcentral.com/1471-2148/8/229</p><p>BMC Evolutionary Biology 2008;8():229-229.</p><p>Published online 8 Aug 2008</p><p>PMCID:PMC2527321.</p><p></p

    Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of -4

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    Uption of linkage is apparent among members the same CC that share the same loci.<p><b>Copyright information:</b></p><p>Taken from "Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of "</p><p>http://www.biomedcentral.com/1471-2148/8/229</p><p>BMC Evolutionary Biology 2008;8():229-229.</p><p>Published online 8 Aug 2008</p><p>PMCID:PMC2527321.</p><p></p

    Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of -3

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    hyper-variable loci in the genome (B). Mosaicism observed in the CGH data is consistent with that observed in newly sequenced genomes (C). (note: Log Ratio data in (A) and (B) and sequence identity data in (C) were colour coded using a common scale reflecting the likelihood of gene presence/absence).<p><b>Copyright information:</b></p><p>Taken from "Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of "</p><p>http://www.biomedcentral.com/1471-2148/8/229</p><p>BMC Evolutionary Biology 2008;8():229-229.</p><p>Published online 8 Aug 2008</p><p>PMCID:PMC2527321.</p><p></p

    Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of -5

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    boxed in red. Allelic differences with respect to the central sequence type (ST) of the CC are highlighted in blue.<p><b>Copyright information:</b></p><p>Taken from "Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of "</p><p>http://www.biomedcentral.com/1471-2148/8/229</p><p>BMC Evolutionary Biology 2008;8():229-229.</p><p>Published online 8 Aug 2008</p><p>PMCID:PMC2527321.</p><p></p

    Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of -0

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    boxed in red. Allelic differences with respect to the central sequence type (ST) of the CC are highlighted in blue.<p><b>Copyright information:</b></p><p>Taken from "Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of "</p><p>http://www.biomedcentral.com/1471-2148/8/229</p><p>BMC Evolutionary Biology 2008;8():229-229.</p><p>Published online 8 Aug 2008</p><p>PMCID:PMC2527321.</p><p></p

    Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of -2

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    L other strains in the dataset and differentiate this group of genetically related strains from other groups of strains.<p><b>Copyright information:</b></p><p>Taken from "Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of "</p><p>http://www.biomedcentral.com/1471-2148/8/229</p><p>BMC Evolutionary Biology 2008;8():229-229.</p><p>Published online 8 Aug 2008</p><p>PMCID:PMC2527321.</p><p></p

    Comparative genomic analysis of associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity-0

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    <p><b>Copyright information:</b></p><p>Taken from "Comparative genomic analysis of associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity"</p><p>http://www.biomedcentral.com/1471-2164/8/359</p><p>BMC Genomics 2007;8():359-359.</p><p>Published online 5 Oct 2007</p><p>PMCID:PMC2174954.</p><p></p>how unique gene conservation profiles and fail to cluster robustly with any major lineage. Branches with greater than 75% bootstrap support are shown in red. Although data is displayed including capsular genes (gray box), these genes were removed during cluster analysis to avoid biasing results. Highly divergent/Absent genes shown in red; Moderately Divergent genes are shown in blue. Legend: Hypervariable loci (L – LOS locus; F – flagellar modification locus; C – capsular locus; R/M – restriction-modification locus); Strain sets (DG: Dutch GBS; DM: Dutch MFS; JG: Japanese GBS; JM: Japanese MFS; CG: Curaçao GBS)

    Comparative genomic analysis of associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity-4

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    <p><b>Copyright information:</b></p><p>Taken from "Comparative genomic analysis of associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity"</p><p>http://www.biomedcentral.com/1471-2164/8/359</p><p>BMC Genomics 2007;8():359-359.</p><p>Published online 5 Oct 2007</p><p>PMCID:PMC2174954.</p><p></p> neuropathogenic strains. Both types of strains can show substantial similarities in genomic background, which includes similarities at several hypervariable regions. The lineage (LIN) of the 56 neuropathogenic strains is shown. Highly similar enteritis-control/neuropathogenic strain pairs (boxes a through d) are shown in expanded form in Figure 3. Legend: Hypervariable loci (L – LOS locus; F – flagellar modification locus; C – capsular locus; R/M – restriction-modification locus); Strain sets (DG: Dutch GBS; DM: Dutch MFS; DE: Dutch enteritis; JG: Japanese GBS; JM: Japanese MFS; JE: Japanese enteritis; CG: Curaçao GBS; CE: Curaçao enteritis)

    Comparative genomic analysis of associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity-1

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    <p><b>Copyright information:</b></p><p>Taken from "Comparative genomic analysis of associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity"</p><p>http://www.biomedcentral.com/1471-2164/8/359</p><p>BMC Genomics 2007;8():359-359.</p><p>Published online 5 Oct 2007</p><p>PMCID:PMC2174954.</p><p></p> neuropathogenic strains. Both types of strains can show substantial similarities in genomic background, which includes similarities at several hypervariable regions. The lineage (LIN) of the 56 neuropathogenic strains is shown. Highly similar enteritis-control/neuropathogenic strain pairs (boxes a through d) are shown in expanded form in Figure 3. Legend: Hypervariable loci (L – LOS locus; F – flagellar modification locus; C – capsular locus; R/M – restriction-modification locus); Strain sets (DG: Dutch GBS; DM: Dutch MFS; DE: Dutch enteritis; JG: Japanese GBS; JM: Japanese MFS; JE: Japanese enteritis; CG: Curaçao GBS; CE: Curaçao enteritis)

    Comparative genomics profiling of clinical isolates of using DNA microarrays-2

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    <p><b>Copyright information:</b></p><p>Taken from "Comparative genomics profiling of clinical isolates of using DNA microarrays"</p><p>BMC Genomics 2006;7():43-43.</p><p>Published online 7 Mar 2006</p><p>PMCID:PMC1434746.</p><p>Copyright © 2006 Nash et al; licensee BioMed Central Ltd.</p>rol strain (higher copy number than in strain A449). Green indicates genes with lower signal intensity for the tester than the control (divergent in sequence or missing or at lower copy number). Gene order reflects results of hierarchical clustering of genes performed as described in Materials and Methods. The strains are ordered as in Figure 1, and unless otherwise noted, all other isolates are subsp. . Asm – subsp. , Asa – subsp. , Ass – subsp. . (A) All genes from the plasmid functional category. The blue bars (both light and dark) indicate genes found on plasmid 5, and the dark blue bars correspond to predicted TTSS genes. (B) All genes from the transposon functional category. The orange bars indicate genes with strong sequence similarity to known transposases
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